| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3193 |
|---|
| Symbol | |
|---|
| ID | 1184850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3584534 |
|---|
| End bp | 3586141 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637394547 |
|---|
| Product | metalloprotease, putative |
|---|
| Protein accession | NP_792981 |
|---|
| Protein GI | 28870362 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.839169 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGGCC CTAATGATTC AAGCCCTGCC GAACTGTTGC CCGAGGGATC TGCCGACGAC
CGAGTCACCA GCCTGTTGTG GGGGCCATTC TGGTTAGGCG ATGCGACCGG CACTCATCTG
ACCTACAGCT TTCATACTGC AGACTCCGTC TACGCCACCA TCTACAGTGG GACCCAGGAG
CCCGACGATG CTTACTCGTT GACCGATGCC CAGGCGGCGG CGGCGAAAAG TGCGCTGGAT
GCATGGAGTG CAGTGGCGGA CATCACGTTC ACCGAGGTCA AGGACACCCC GGAGAACGTT
GGCGACATCC GTTTTGGCGG TTCCAACAAC CTGCAAAGCA CCGAGTTCGG TCAGGCCTAT
ACGGCGGGTA CGGAAGGTAG ATCCGGTGAC GTCTGGATCG GGCCGAAGGT CAACGCAGCG
GATCCCGCGA AAGGCACGGA TGATTACCTG ACGTTCATGC ACGAGACGGG TCATGCGCTC
GGCTTGAAGC ATCCGTTTGA AGGCACGCAG TACAACGATG TACTGCTTGA CGCCAAATTC
GAAGACGCCC GCTACACCAT CATGAGCTAC ACCAACAACT ACAGCTTCAA GCCCACCACG
CCGATGTTGC TCGATGTCGC GGCCATGCAG TTCATCTACG GTGCCAATAA CAGCTATCAC
ACCGGCAATG ACGTTTATAA GTGGGCACCC GATCAATCGG TGTTCGAGAC CATTTGGGAC
GCAGGCGGCA AAGACACGAT CGATGCCAGC AATCAGGCGT CGTTCGTCAA GATCAACCTC
AATGAGGGCG AGTTCAGCAC CATCGGCAAG GCTTTTCTGG ATTACAACCA GAACCCTGAT
GCCCCGACGC TGATGAACTC CGGGCTGGCG ATTGCTTATG GCGCGCACAT TGAAAACGCC
ATTGGTTCCG CCTTCAACGA CACGCTGATC GGCAACGATC TGGCGAACGT ACTGGATGGT
CGTGGCGGTC TGGATATCAT GATCGGTGGC CTGGGTAACG ATACCTACGT TATCGATCAG
GCAGACGAAC TGGCACTGGT TCAGGAAAAG GCCAACGAAG GCGTCGACAC GCTCAAGATC
ACCTACGACA ACACGTCGGC AACTGCTGCG GTGATCGATC TGAATGCAGG CCCGCTGGCC
AACTTTGAAA ACGTCCACCT CAAAGGCGAG GGCGAGTTCA CGCTGTTGGG CAATGATCGC
AACAACACCC TGACCGGTAA CGACGCGAAC AACGTGATCT TTGGCGGCGC CGGCAATGAC
AAGCTGGTCG GCGGCCTGGG CGCAGATATC ATGACCGGCG GCACCGGTGC TGACCGTTTT
GTGTTCAACG ACCTGGCAGA GACCGGCAAA GGTGCGGCCA GCGATGTGAT CACAGACTTC
AACAGCCAGC AGGGCGACAA GCTCAGCTTC CTGAAGATGG ATGCCAACGT GGACACCAAA
GCCCTTGATG CTTTCAGCTT CATTGGCAGC GGCGAGTTCA CCGGGGCCGG CCAGCTGCGC
TTTGCCGACC ATGTGCTGTC CGGCAACGTC AATGGCGATC TGCATGCTGA TTTTCAGGTT
CAGCTGGTAG GCGTCACAGC GTTCCATGTT ACCGACCTGG CGGTCTGA
|
|---|
| Protein sequence | MPGPNDSSPA ELLPEGSADD RVTSLLWGPF WLGDATGTHL TYSFHTADSV YATIYSGTQE
PDDAYSLTDA QAAAAKSALD AWSAVADITF TEVKDTPENV GDIRFGGSNN LQSTEFGQAY
TAGTEGRSGD VWIGPKVNAA DPAKGTDDYL TFMHETGHAL GLKHPFEGTQ YNDVLLDAKF
EDARYTIMSY TNNYSFKPTT PMLLDVAAMQ FIYGANNSYH TGNDVYKWAP DQSVFETIWD
AGGKDTIDAS NQASFVKINL NEGEFSTIGK AFLDYNQNPD APTLMNSGLA IAYGAHIENA
IGSAFNDTLI GNDLANVLDG RGGLDIMIGG LGNDTYVIDQ ADELALVQEK ANEGVDTLKI
TYDNTSATAA VIDLNAGPLA NFENVHLKGE GEFTLLGNDR NNTLTGNDAN NVIFGGAGND
KLVGGLGADI MTGGTGADRF VFNDLAETGK GAASDVITDF NSQQGDKLSF LKMDANVDTK
ALDAFSFIGS GEFTGAGQLR FADHVLSGNV NGDLHADFQV QLVGVTAFHV TDLAV
|
|---|
| |