| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3190 |
|---|
| Symbol | |
|---|
| ID | 1184847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3580727 |
|---|
| End bp | 3582007 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637394544 |
|---|
| Product | peptidase, M20/M25/M40 family |
|---|
| Protein accession | NP_792978 |
|---|
| Protein GI | 28870359 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01879] amidase, hydantoinase/carbamoylase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATAC CCTCTATCCC TGAGCTGATC GAGCCGAGCG CCGTTGATCT GGCGGCGTTT
GAAGCATTGT TTCGACAAAG CTCGGCCATT GGCGCAACAT CAGCTGGCGG TCTGCATCGG
CTGTCTGCCT CGGCTGAAGA TGGTCAGGTA CGCGACCTGT TTCGTGGCTG GCTTGAACAG
CACGGCTTTG AAGTGCGCGT CGATGCGATC GGCAATCTGT TCGGCCTGAT GACCTTTGAC
CCTGACGCGC CGTACCTGCT GTGCGGTTCA CACCTGGACA GCCAGCCGAG CGCGGGGCGC
TTTGACGGCG TCTACGGTGT GCTTGCAGGT GCTGTCGCGG TCTCCAGCCT GGCGCGGCAG
ATGCGTGAGC GCGGTGAAAA CCCGGCCTGC AACCTGGCCG TGGTCAACTG GACCAACGAG
GAGGGCGCAC GTTTTCAGCC AAGTCTGATC GGCAGCGGTG TATTTACCGG TGCGCTGGCG
CTGGAGGCCG CCTGGGACAG TTGCGATGGC GACGGTATCC GCCTCAAGGA CGCCCTGCAG
GCCATCGGCT ATCTGGGCAG TGATCAATTC GATCTCGCCA TTGCCGGGTA CGTCGAAATT
CACGTCGAGC AGGGCTCTGG CCTGGAAAAC AGCCAGACGG CCGTCGGCGT GGTGCGCGAA
ACCTGGGCGG CACTCAAGCG CCGGGTACGC TTCGATGGCG AGCAGAATCA TACCGGCCCA
ACGCCGATGG CCGCCCGCCG TGATGCGTTG CTGGCGGCCG CGCACACGAT CACTGCGGTG
CGCGAAGAAG CCGGGCTGCA CGGCCTGCAG ATGCACACCT CGGTCGGGCG TATCGAGGTT
TACCCCAATT CGCCCAATGT GGTGCCCTCC AGGGTGTCGC TGCTGATCGA ATACCGCTCC
CGCGACGTCG AGCTGCTAAG GGTGGCGGCA GAGCGCCTGG ATGCGAGCCT GCATGCCATC
GCCGACAAGA CAATGACCGG TTTTCAAGTG GAAAGCAGCG TACTGCGAGC ACCTGCCAGG
CTCAATGACC GGTTTGCGGG GCTGGCGCAC GCCGTAGGCG CCGAGCTGGG CTTGTCGACC
ACCGACAGCA TGACCGTCGC CGGCCACGAT GCGATCAGCC TGAACCGTCA TTATCCGGTG
TGCCTGCTGT TCATCCCCAG CAGCAATGGC GTTTCTCACA ATGAGGCCGA ATACACCAGC
GATCAGGACA TGCGCAACGG TTTGCGCATG CTGACCGGGC TGCTGTATCG CGCGTGTGCC
TCATCTGTTG CGTTTCGCTG A
|
|---|
| Protein sequence | MSIPSIPELI EPSAVDLAAF EALFRQSSAI GATSAGGLHR LSASAEDGQV RDLFRGWLEQ
HGFEVRVDAI GNLFGLMTFD PDAPYLLCGS HLDSQPSAGR FDGVYGVLAG AVAVSSLARQ
MRERGENPAC NLAVVNWTNE EGARFQPSLI GSGVFTGALA LEAAWDSCDG DGIRLKDALQ
AIGYLGSDQF DLAIAGYVEI HVEQGSGLEN SQTAVGVVRE TWAALKRRVR FDGEQNHTGP
TPMAARRDAL LAAAHTITAV REEAGLHGLQ MHTSVGRIEV YPNSPNVVPS RVSLLIEYRS
RDVELLRVAA ERLDASLHAI ADKTMTGFQV ESSVLRAPAR LNDRFAGLAH AVGAELGLST
TDSMTVAGHD AISLNRHYPV CLLFIPSSNG VSHNEAEYTS DQDMRNGLRM LTGLLYRACA
SSVAFR
|
|---|
| |