| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3189 |
|---|
| Symbol | |
|---|
| ID | 1184846 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3579764 |
|---|
| End bp | 3580717 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637394543 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_792977 |
|---|
| Protein GI | 28870358 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0510] Predicted choline kinase involved in LPS biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.854112 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATATG CACAAAGCCT GAACACACGC CTGCTTGGCG CGTTGGCGAG TTACGGGTTC
GACTCAGAGC CGCACGTCGA ACCCGTCACG CAGGGCGTGG CATCGCCGTC GCGGCTGTCC
ACCGAGTGGG CAGGCTTTCG AGTGTCGTTC GGGGAAAGCC GCTGTTACGC AAAAGTGCTG
TACGCCGACA TGACGCCTGT TATCGATTTC GTATCTGCAG CGCAGGCCAG TCAGTGCGCA
GGCCTCAGCG GTGCAGCGCC ACGTTTGCTG AGTGGCGACG AGCAGAGTGG CGTGCTGATT
TTCGAGGACC TGGGGCCTCA ATGGCGCGCC GCGCGGCTTG ATGACCTGCT CGTACCGGGT
CGGCTGGACG CGCTGTGGGC ACTCAAACGC CAGGTGCACG CCGGGCCAGT GCCGGATTTC
ATCCGCTCGC CGATGGCGGA TATCGAGCGC CTTCGCGCAC TGTGCAAGCG CGACGGCGTT
GCGCTGCCCG CCGAACAGCA ATGGATCGAC CGCTGCGTGG ACATGGTCTG GCAGGCCTTG
CAAAAACGTC AGGTTCGGTC CGTCCCGGTG CACGGTGATG GCGTGGCCAG CAACGTGATG
GTGTCCGGTG ATGGCCAGTT ACGACTGGTG GATTTTGACT ATGGCGGCTG CATGGACCCG
TGGTACGACG TGGCGATTAC CCTCAATGAG CTTTATTCGT TCGAGAGCGA GTGGCGCGCC
GGCATCAGCG CTTGGGCGGG CCAGTGCCTT GAGGTCGACT ACGCCGTCTG CCGGCTGTAT
GCGCTGATCA ATGACTGGTA CTGGACATTG TGGGGATTCT GGAGCGGTAG CACTTCTGCC
AGGCAACTGG AGTTCTCCAA AGTCGGGCAG TGGACGTTAC TGCGCTGTCG GCAATGTGTT
CAGGACCCAC GGCTGGAAGG CTGGATGCGT CAGGTTCAGG AGGGTAAGGC ATGA
|
|---|
| Protein sequence | MSYAQSLNTR LLGALASYGF DSEPHVEPVT QGVASPSRLS TEWAGFRVSF GESRCYAKVL
YADMTPVIDF VSAAQASQCA GLSGAAPRLL SGDEQSGVLI FEDLGPQWRA ARLDDLLVPG
RLDALWALKR QVHAGPVPDF IRSPMADIER LRALCKRDGV ALPAEQQWID RCVDMVWQAL
QKRQVRSVPV HGDGVASNVM VSGDGQLRLV DFDYGGCMDP WYDVAITLNE LYSFESEWRA
GISAWAGQCL EVDYAVCRLY ALINDWYWTL WGFWSGSTSA RQLEFSKVGQ WTLLRCRQCV
QDPRLEGWMR QVQEGKA
|
|---|
| |