Gene PSPTO_3186 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3186 
Symbol 
ID1184843 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3576922 
End bp3578451 
Gene Length1530 bp 
Protein Length509 aa 
Translation table11 
GC content60% 
IMG OID637394540 
Productsodium:solute symporter family protein 
Protein accessionNP_792974 
Protein GI28870355 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG0591] Na+/proline symporter 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCAGCA CAACAACGGT TTCGGATCTG TACATCACGT TTGGTCTGAT CGGCGTGTTT 
CTGGCCGGTA TGATTGCCGT GCTTTATGCA ACCAACCGCA AGAGCGACAG CTTTTCCGAT
TACGCCGTTG GCGGGCGTTC CTACGGTCCG TGGTTCATCG CCATGTGTTA CACCAACTCC
TGGTGGCCGG GCGCGACCTT TACTGCATTC TTTGCGTTGT CCGTGGGTGG CGCGCTGGGC
TTTTACGGCA TGGTCTACGC CACGCTCGGG GTGACGGCGA TGTACCTGAT GGCCAATCGC
GCCTGGACCT GGGGCAAACG CTTCAACCTG ACTACTCAGC CTGATTTACT GGGCATGCGC
TTCAACAGCC CGGTGGTCAA ACGTATCGCT TCGATCATCG GCATCATCTC GGTATTCCCG
TGGGTGGTGA TGGGCATTCA GGCCCTTGCG ACCTTGTTCC AGTTCGCCAG TTTCGGTCGT
TGGGGGGTGA CCACCTGCCT GCTGGTCGGG GTTGCCGTGA TCCTGATTCG TCAATACTGG
ACGGTCAGCA TGGGCATGCG CGGCCTGATC ATGACCGACA TGTACCAAGG GCTTATTGCC
TATGTGTTGT GTGCCGCGCT GTGTATCTTC TTGATGTTCG GTGCTCAGGC GTCGTTCTCG
AACCTGTCGC AGCTGCCCGC CAGCATGCTG GTGATTCCTG GCGGTACAGG CAGCACCTAC
GGGCCGATGT ACATGTTCAG CCTGATCTTT ACCGGCGTGA TCGGCTCGAT GTGCTGGCCC
ATGAGCTTCC AGCGTATCTA CACCGCCAGC GGTGTGCGCT CGGTCAAGAA GGGCACACTG
CTGACCATCC TGCTGGTGGG TGGTTTCTAC GGCATTCTGA TGCTGTTCGC TGCGGCCATC
AGTCAGGACC CGAACGTAGC GGCCCATCCG CAGCATGGCT GGTTCCTGTC GCTGTTCGAC
ATCGGCGGGC CGTGGTTGCT GGCCGTGGCA ATCATGATCG TTCTGGCCGC CAGCATCGGT
CATGTCGACG GTTGCGTGCA GGTGTGCGGT ACACAGTTCG CCAACGATCT GGCGACCTGG
AACACACCGC GCAGTGATCG CGAAAAAACC ATACTCGCCA AAGCCGGCAT GGTCGTGTTC
ATTGCCGCGG CGTCGCTGCT GGCGTACCTG ACCTTCGACT ACGCACGCCT GCAATTGCTG
GCGCAGATTT CCTATCAGGG CATCATTCAG CTGGCTGTGC CGCTGTTCTT CGGGGTTTTC
AGCCGTCGCG GCAACAAGCA GGGCGCGATT GTCGGCATGC TGGTGGGTAT AGTGATCGCC
ATCGTACTGA CCACGATCTA CCCGGATGAC ATTCCCGGGC TGGGTTCGTT GACCAGCGGC
ATTGTCGGGC TGATCTTCAA TGCGGGCATT TTTGTCGCCT GCGCCGTGGC CATCAAGCCG
AGCGCCGAGG AAGTGCGACG AGTCGATGAG CTGTTCGCCA TGGCTGCGCC GCAGCGTCAC
CCTGCAGGCG TGGCGCCGGT CATGAGCTGA
 
Protein sequence
MISTTTVSDL YITFGLIGVF LAGMIAVLYA TNRKSDSFSD YAVGGRSYGP WFIAMCYTNS 
WWPGATFTAF FALSVGGALG FYGMVYATLG VTAMYLMANR AWTWGKRFNL TTQPDLLGMR
FNSPVVKRIA SIIGIISVFP WVVMGIQALA TLFQFASFGR WGVTTCLLVG VAVILIRQYW
TVSMGMRGLI MTDMYQGLIA YVLCAALCIF LMFGAQASFS NLSQLPASML VIPGGTGSTY
GPMYMFSLIF TGVIGSMCWP MSFQRIYTAS GVRSVKKGTL LTILLVGGFY GILMLFAAAI
SQDPNVAAHP QHGWFLSLFD IGGPWLLAVA IMIVLAASIG HVDGCVQVCG TQFANDLATW
NTPRSDREKT ILAKAGMVVF IAAASLLAYL TFDYARLQLL AQISYQGIIQ LAVPLFFGVF
SRRGNKQGAI VGMLVGIVIA IVLTTIYPDD IPGLGSLTSG IVGLIFNAGI FVACAVAIKP
SAEEVRRVDE LFAMAAPQRH PAGVAPVMS