| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3179 |
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| Symbol | |
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| ID | 1184836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3570056 |
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| End bp | 3571735 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637394534 |
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| Product | PqiB family protein |
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| Protein accession | NP_792968 |
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| Protein GI | 28870349 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3008] Paraquat-inducible protein B |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.360667 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGACA ATACCCTCCC CCCGTCTGCT TCAGTGCCAC GGCCTGAAGT CAAACGTCGT
CGCCTGAGCG TCTCGCTGAT CTGGCTGGTG CCGATCATTG CAGCGATCAT TGGTGCATCC
ATGGCGTTTC ACGACTGGAT GAACATCGGG CCGAAGATCA CCGTGAGCTT TTTGACCGCC
GAAGGCCTGG AAGCCAACAA GACGCAGGTC AAATACAAGA ACGTGGTCAT CGGCATGGTT
ACCGAGATCA GCCTCAGCGA CGACCGCACC CATGTGCTGG CCAACATCGA ACTCAATACC
AGCGCATCGC CTTTCACGCG GATCGACAGC CAGTTCTGGG TTGTACGTCC GCGCATTGGT
GCCCACGGCG TATCGGGGGT CGATACCCTG CTGTCAGGCG CTTTCATTGG CGCAGACGCA
GGTAGCTCGG ACGAAACCAA GACCAGCTTC ACTGGCCTGG AAACCCCGCC ACCAGTGACC
TTCGGAGAAA AAGGCAAGCG TTTCACCCTG CACACCGACG ACCTCGGCTC GCTGGACATC
GGCTCACCCA TCTACTATCG CCGTATCCAG GTTGGCCAGG TGGTTGCCTA TGACCTGTCC
AAGGACGGCC GTGGCGTCGA CATCCAGATC TTCATCAATG CGCCGAACGA TCAGTACATC
ACCACCGACA CGCGTTTCTG GAATGCCAGT GGCGTAGACA TCACGGTTGG CGCCTCGGGG
GTGAAGGTCA ATACTCAGTC CCTGACCTCG ATCCTCTCCG GCGGCATCGC CTTCCGCGAG
CCCAACTGGA GCCCCGACAG CAAGCCGGCT GACGAGAATG CCGAATTCAA GATTTTTGAA
GACCAGACCA CAGCGCTGGC ACCACCCGAT GGCGAGCCGC GTTACATCCG CATGCGTTTC
AACCAGTCGC TTCGCGGGCT GGCGGTGAAC GCGTCGGTGG ATTTCCTGGG CGTTACCATC
GGCAAGGTGG TGTCGGTCGA CCTGGATTAC GACCCGGCCA CCAAGACCTT CCCCGGCATT
GTCGGTGCAG TGATCTACCC CAAGCGTCTG GGTGCTGCCG AGTCCAAGTT GAAGGAACTG
GGTGGCGCAG GGGATGAAGA AGAACAGTCC GCCAGAGTGT TGGGGGCGTT CGTCGCCAAC
GGCCTTCGTG CCCAGGTACG CAATGGCAAC CTGTTGACCG GCCAGCTGTA CATCGCCATG
GAGTTCGATC CGAAGGCGCC GAAAGTGTCG TTCAACGCCA AGGCCCGCCC GCTGGAAATT
CCGACGGTGC CGGGCAGCTT CGACAAACTG CAAGAGCAAC TGCAGGCGTT CGTCGAGAAG
CTCAGTAAAC TGCCAATCGA CCAACTGGCG GGCAATCTCA ACGGTACCCT GAGCGAGCTG
CAGAAGACGC TCAAGCAGGT CAACGGCAGC GTGCTGCCGC AAATGCGTGG CACCTTGCAG
CAAGCCGAGA AAACCCTGGG CACCGCCAAC GACTCATTCG CTGAAGACTC GCCGGCGCGT
CAGCAGTTGG GCCAGGCGCT GGATGAGGTG CAACGCACCG CCCGTTCGGT CCGGGTACTC
ACCGACTTCC TCAGCCGCCA CCCCGAGTCG CTGATTCGCG GCCGCACCGG CGACGCCGCG
CCACGTTCAT TCAACGCCCC GTCCTCGTCC CGAGCCATTG ATCCGGAGCC AAAACAATGA
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| Protein sequence | MSDNTLPPSA SVPRPEVKRR RLSVSLIWLV PIIAAIIGAS MAFHDWMNIG PKITVSFLTA
EGLEANKTQV KYKNVVIGMV TEISLSDDRT HVLANIELNT SASPFTRIDS QFWVVRPRIG
AHGVSGVDTL LSGAFIGADA GSSDETKTSF TGLETPPPVT FGEKGKRFTL HTDDLGSLDI
GSPIYYRRIQ VGQVVAYDLS KDGRGVDIQI FINAPNDQYI TTDTRFWNAS GVDITVGASG
VKVNTQSLTS ILSGGIAFRE PNWSPDSKPA DENAEFKIFE DQTTALAPPD GEPRYIRMRF
NQSLRGLAVN ASVDFLGVTI GKVVSVDLDY DPATKTFPGI VGAVIYPKRL GAAESKLKEL
GGAGDEEEQS ARVLGAFVAN GLRAQVRNGN LLTGQLYIAM EFDPKAPKVS FNAKARPLEI
PTVPGSFDKL QEQLQAFVEK LSKLPIDQLA GNLNGTLSEL QKTLKQVNGS VLPQMRGTLQ
QAEKTLGTAN DSFAEDSPAR QQLGQALDEV QRTARSVRVL TDFLSRHPES LIRGRTGDAA
PRSFNAPSSS RAIDPEPKQ
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