| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3176 |
|---|
| Symbol | |
|---|
| ID | 1184833 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3567159 |
|---|
| End bp | 3568229 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637394532 |
|---|
| Product | thermolysin metallopeptidase, putative |
|---|
| Protein accession | NP_792966 |
|---|
| Protein GI | 28870347 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3227] Zinc metalloprotease (elastase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.107926 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGCGACG ACCGAAACCC CCTGCATTGT TTCATTCCGC CTTACATGCT GGAGCGTATG
GCGCAGTCCC CCAAGAACCT GATCAGCGCC AGAGCCATTG CCAACCTGAC CAGCAGCTCG
GCGTTCCTTG CCTCTCGCCT TTCTGCGCGA GCCATGCCAT CCATGCACGC TATCAAGTCG
CCGGATGGCA AAAAACACCG CGCGATTCAC GACGCCAAAG GTACTGACGA TCTTCCCGGC
GTTATCGTCC GCAAAGAGGG CCAGGCACCG ACCGGCGACA AGGCTGCAGA CGAAGCCTAC
GATGGCTCCG GTGATGTCTA TGACTTCTAT GCGCAGCTCT TCGAGCGCAA TTCACTGGAT
GACAATGGCA TGTCACTGGT GTCGACTGTG CATGTCGCCG AAGTCGACTT CAATGGCGAC
CACGTGCCCC TGAGCAATGC CTATTGGAAT GGCAGCCAGA TGGCGTACGG CGATGGCGAT
GACCTGGTCT TCAAGCGATT CACCGGCAGC CTTGAAGTGA TCGGCCACGA GCTGACCCAC
GGCGTGCAGA GTTTTACCTC CAACCTGGAC TACAAAGGCC AGTCCGGTGC GTTGAATGAA
CACTTTGCCG ATGTGTTCGG CATGCTGGTA CGTCAGTGGA AGCAAGGCAC CAGCGCCGCC
GAATCGGACT GGGTGGTCGG CAAGGAGTTG CTGGTGCCTG CACCGACCCG GCGAGGCATT
CGTGACATGG AAAGACCCGG CACCGCCTAT GCCAACGACC CGGACCTTGG CGACGATCCG
CAACCGGCAA CAATGGCGGA TCTGTATAAG GGGGCCAAGG ACCGGGGCGG CGTGCACATC
AACTCGGGCA TTCCCAATCG GGCCTTCGTG CTGGTGGCCA AGGCACTCGG CGGAAATGCC
TGGGAAGTGG CAGGCAGAAT CTGGTATGAA ACGATGTTGG CGTTGGAATC GGACAGCCAG
TTCGTCGATT GCGCCAAAAC CAGCATAAAA ATCGCCGGCG ACTCGCGTTT TGGTGCAAAA
GCCAAAAAAG CCGTGCAAGC GGCCTGGAAA GAGGTCGGCG TCAAGGTGTA A
|
|---|
| Protein sequence | MCDDRNPLHC FIPPYMLERM AQSPKNLISA RAIANLTSSS AFLASRLSAR AMPSMHAIKS
PDGKKHRAIH DAKGTDDLPG VIVRKEGQAP TGDKAADEAY DGSGDVYDFY AQLFERNSLD
DNGMSLVSTV HVAEVDFNGD HVPLSNAYWN GSQMAYGDGD DLVFKRFTGS LEVIGHELTH
GVQSFTSNLD YKGQSGALNE HFADVFGMLV RQWKQGTSAA ESDWVVGKEL LVPAPTRRGI
RDMERPGTAY ANDPDLGDDP QPATMADLYK GAKDRGGVHI NSGIPNRAFV LVAKALGGNA
WEVAGRIWYE TMLALESDSQ FVDCAKTSIK IAGDSRFGAK AKKAVQAAWK EVGVKV
|
|---|
| |