Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3130 |
Symbol | glgX |
ID | 1184787 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3519308 |
End bp | 3521491 |
Gene Length | 2184 bp |
Protein Length | 727 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637394488 |
Product | glycogen operon protein GlgX |
Protein accession | NP_792922 |
Protein GI | 28870303 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.167727 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATACGA AGTCAACTCC AGCGGCAGAT GAAAGCTCCG CTTCGCACGA CAGTTCTGCC AGCACCCCGA CGCGCATTCG TGAAGGGCTT CCCTTCCCTC TCGGTGCCAG CTGGGATGGT CTGGGTGTAA ACTTCGCCCT GTTCTCGGCC AACGCCACCA AAGTCGAACT CTGCCTGTTC GATTCGACCG GTGAAGTAGA GCTGGAGCGT ATCGAGCTTC CGGAATACAC CGACGAGATC TACCACGGCT ATCTGCCCGA CGCTCACCCT GGGCTGATTT ACGGCTACCG TGTTTATGGT CCTTACGATC CGAAGAACGG CCATCGCTTC AACCACAACA AATTGCTGAT CGACCCGTAC GCCAAGCAGT TGGTCGGTGA GCTCAAATGG TCGGAAGCGT TGTTCGGCTA CACCATCGGC CATGCTGACG GCGACCTGAG CTTCGACGAG CGCGACAGCG CGCCGTTCGT GCCAAAAAGC AAGGTGATTG ACGAGGCCTA CACTTGGGGC CGCGATCAGC GCGTCGGTAC GCCGTGGGAC AAGACCATTT TCTATGAGAC CCACGTGCGC GGCATCACCA TGCGCCACCC TGAGGTCGCG GAAGAGTTAC GCGGTACGTT TGCAGGCCTG GGATCAGCGC CCGTCGTCGA TCACATCCGC AAGCTGGGCG TGACGTCTGT CGAGCTGCTG CCGATCCATG CGTTCGTCAA CGATCAGCAT TTGTTGCAAA AAGGCATGAC CAACTACTGG GGCTATAACA GCATCGCGTT CTTCGCCCCG GACCCGCGCT ACCTGGCCAG CGGCAAGATC GCCGAGTTCA AGGAAATGGT CGCACACCTG CACCATGCAG GCCTGGAGGT CATTCTCGAC GTGGTCTACA ACCACACCGC CGAAGGCAAC GAGCTGGGTC CGACCCTGTC GATGCGCGGT ATCGACAACG CCTCATATTA CCGGCTGATG CCGGACGACA AACGCTATTA CATCAACGAT TCCGGTACCG GCAACACCCT CGACCTGAGC CACCCTTGCG TATTGCAGAT GGTCACCGAC TCGCTGCGTT ATTGGGCGTC GGAAATGCAC GTCGACGGCT TCCGTTTCGA CCTGGCAACC ATTCTCGGTC GTTACCACGA TGGTTTCGAT GAGCGTCACA GCTTCCTGGT TGCGTGCCGT CAGGACCCGG TCCTGCGTCA GGTCAAACTG GTCGCCGAGC CTTGGGATTG CGGCCCGGGT GGCTATCAAG TGGGCGGCTT CCCGCCGGGC TGGATGGAAT GGAACGACAA GTTCCGTGAC ACCGTGCGGG CCTTCTGGAA AGGCGACGAA GGCCAACTGG CCGACTTCGC TGCACGCATG ACCGCTTCGG GCAACATGTT CAACCAGCGC GGTCGCCGCC CTCAGGCGTC GGTGAACTTC ATCACTGCGC ACGATGGCTT CACGCTGCAC GACCTGGTGT CGTACAACGA CAAGCACAAC GAGGCCAACG ACGAAAACAA CCAGGACGGC AGCAATAACA ACGTGTCCTG GAACCACGGC GTCGAAGGTC CGACCGAAGA CCCGGAAATC AACACCCTGC GTCTGCGCCA GATGCGTAAC TTCTTCGCCA CATTGCTGCT GGCTCAAGGC ACGCCGATGA TCGTTGCCGG TGATGAATTC GCGCGCACTC AGCACGGCAA CAACAATGCC TATTGCCAGG ACAGTGAAAT TGGCTGGATC AACTGGGACC TGGACGAAGA CGGCGAAGCG CTGCTCAAGT TCGTCACCCG TGTGATCAAG TTGCGTCAGA GCTACCCTAT CCTGCGTCGT AGCCGCTTTT TGGTCGGCGA CTACAACGAA GAAATCGGCG TCAAGGACGT AACCTGGCTT GCGCCAAGTG GCGAAGAAAT GAGTGTCGAG CAGTGGCACG ATGCCAACGG CCGCTGCCTG GGCATGCTGA TGGATGGCCG CGCGCAGGAA ACCGGCATTC GTCGTCCGGG TGCCGACGCC ACGCTGCTGT TGGTGGTCAA CTCGCACCAT GACGGCGTCA ACTTCACCTT GCCGCAAGTA CCGGAAGGCA CCCATTACGA GTGCCTGATC GACACTAATC AGGACGATGC ACGCAGCAAG GAGCAGTTTG CGTTCGGTTC GCATTACACC GTCACCCCAC GTTCGCTGCT GCTGTTTGAA GTCAAGCGTG AAGATCAGCA ATGA
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Protein sequence | MNTKSTPAAD ESSASHDSSA STPTRIREGL PFPLGASWDG LGVNFALFSA NATKVELCLF DSTGEVELER IELPEYTDEI YHGYLPDAHP GLIYGYRVYG PYDPKNGHRF NHNKLLIDPY AKQLVGELKW SEALFGYTIG HADGDLSFDE RDSAPFVPKS KVIDEAYTWG RDQRVGTPWD KTIFYETHVR GITMRHPEVA EELRGTFAGL GSAPVVDHIR KLGVTSVELL PIHAFVNDQH LLQKGMTNYW GYNSIAFFAP DPRYLASGKI AEFKEMVAHL HHAGLEVILD VVYNHTAEGN ELGPTLSMRG IDNASYYRLM PDDKRYYIND SGTGNTLDLS HPCVLQMVTD SLRYWASEMH VDGFRFDLAT ILGRYHDGFD ERHSFLVACR QDPVLRQVKL VAEPWDCGPG GYQVGGFPPG WMEWNDKFRD TVRAFWKGDE GQLADFAARM TASGNMFNQR GRRPQASVNF ITAHDGFTLH DLVSYNDKHN EANDENNQDG SNNNVSWNHG VEGPTEDPEI NTLRLRQMRN FFATLLLAQG TPMIVAGDEF ARTQHGNNNA YCQDSEIGWI NWDLDEDGEA LLKFVTRVIK LRQSYPILRR SRFLVGDYNE EIGVKDVTWL APSGEEMSVE QWHDANGRCL GMLMDGRAQE TGIRRPGADA TLLLVVNSHH DGVNFTLPQV PEGTHYECLI DTNQDDARSK EQFAFGSHYT VTPRSLLLFE VKREDQQ
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