| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3127 |
|---|
| Symbol | malQ |
|---|
| ID | 1184784 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3513859 |
|---|
| End bp | 3515937 |
|---|
| Gene Length | 2079 bp |
|---|
| Protein Length | 692 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637394485 |
|---|
| Product | 4-alpha-glucanotransferase |
|---|
| Protein accession | NP_792919 |
|---|
| Protein GI | 28870300 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1640] 4-alpha-glucanotransferase |
|---|
| TIGRFAM ID | [TIGR00217] 4-alpha-glucanotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.284548 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAATG AGCAATTGGA GAGGCTTGCG ACCGAGGCAG GACTGTCGGT GCACTGGGTC
GATGCCAACG CCAGGCCACA GGTCGTCAGC CCTGATGTGC TGCGCAAGGT TCTGGAAGCG
CTGGGCTATC CTGCTGAAAG CGGTGAGGCC ATTGATGCCA GCCTGCAAAA ACTGCAGCTC
GCCCGTCATG GCGCAAGCGC CCCACCCCTG CTGACGGTCG ATCAGGACAG CAATCTGGAC
CTGTCGGAAT GGTTTGCGGC GCAAACACCG TTCACGCTGC ACCTTGAAGA CGGCTCTTCG
ATTGACGCCA CGCTGACCGC AAGCGGCGAA TTGCCAGCAC TTGCGCCCGT CGGCTATCAA
CAGCTGGAAA TTGCCGGCCA GCACCTGACC CTCGCTGTTG CCCCGAAAAC CTGCTTCAGT
ATGGCAATGG CTGTCGATGC GCCAGTGCCA CGCGGCTGGG GCCTGACGGC GCAGCTTTAC
AGCCTGCGCC GCGAAGGTGA TGGCGGCTTC GGCGACACGG AGGCACTGGA AATGCTGGTG
CGTTCGGCCG GTGAGCGCGG AGCCGATGCG CTGGGCATCA GCCCCATTCA CGCCATGTTC
GCCAACGACC CACGCCGTTA CAGCCCGTAC TCGCCGTCCA GCCGGCTGTT CCTTAACAGC
CTGTATGCCG CGCCGGGCGC AGTTCTCGGC GAGCGTGCCT GGCTCCAGGC AATCGAAGAT
GCAGGCGTAA GTGAAGAAAT GGCACGCCTG GAAACACTGT CCTTGATCGA CTGGCCAAGC
GCAGCAAACG CCAAATGGAA AGCGTTTCAC GCCCTTTACG ACGTGTTCAG CACCGGCGCG
CATCCACTGC ACGAAGACTT CAACAGTTTC CGCCACAGCG GTGGTGAAGC GCTGGAAAAT
CATTGTCGCT TTGAAGCCCT GCGCGCCGAA TCGGCCACGC TGGGTATCAG CGAAAACTGG
CACGAATGGC CGGACACATT CAAGGATCCG CGCAGTCAGG CTGTCGCGCA ATTTGCCGAA
ACACATGGCG AGCAGATCAG CTTCCATGCC TTTGCCCAAT GGCTGATTGC CCGTGGCCTT
GAGCGTGCGC AGGTTGCCGC GCGCAGCAGC GGCATGCGCA TCGGCCTGAT TGCCGACCTG
GCCGTGGGTG CCGATGGTGC CGGTAGCCAG GCCTGGAGCC GTCAGGATGA GTTGCTCTCG
GCCCTGACCG TCGGCGCGCC GCCCGATATC CTCAACCGCG CCGGACAAAG CTGGGGCATC
TCGGCTTTTT CACCGGATGG CCTAAAGCGC AACGGGTTTC GTGCCTTCAT TGAAATGCTG
CGTGCCAACT TCGCCCATGC TGGCGGGTTG CGCATCGACC ACGTCATGGG GCTGCAGCGT
TTGTGGGTTA TCCCGCAGGG TTCGCCGCCC AGCGAAGGTG CCTACCTCAA TTTTCCGCTC
GACGACATGC TGCGCCTGCT GAGCCTTGAA TCCTGGCGGC ACAAGGCAAT CGTGCTGGGC
GAAGACCTCG GCACCGTTCC TGAAGGCCTT AGCGAGAAAC TCAGCGCACG GGCGATTCTG
GGCATGCGCG TACTGTTGTT CGAACAGAAC AACGGCCAGT TCAAACCGAT CCTCGATTGG
TCCGATCAGG CACTGGCCAC CACCAGCACG CATGACCTGC CGACGCTGGC AGGCTGGCTC
AGCGAGCTGG ACATCGAATG GAACGCCCGC CTGGGTCACA TCGATGAACA GCACGAAGCC
CAATGGCGTG ATGAACGTGT GCGCGAATAC CACAGCTTGC GTCGCGCCTT GAGCCAGAAC
ATCGAAGAGA TGCCCGCCGA CAGCGAGGAC CCGGAGCAGA TTATCGACGC GAGTGTGCGT
TATCTGGGCC ACACGCGTGC GCCACTGGTG CTGCTGCCAA TGGAGGATGC ACTGGGTGTC
GAGGAGCAGG CCAATCTGCC CGGCACCATC GATAGCCACC CGAACTGGCG CAGGCGCCTG
CCCGGCACTG CTGCCTCCCT GCTTGATCAT CCACATGCTG CTCGACGACT GGAATTGCTG
TCCCAATCCC GGCTGCAAGC TGCGGAGCGT GACCGATGA
|
|---|
| Protein sequence | MNNEQLERLA TEAGLSVHWV DANARPQVVS PDVLRKVLEA LGYPAESGEA IDASLQKLQL
ARHGASAPPL LTVDQDSNLD LSEWFAAQTP FTLHLEDGSS IDATLTASGE LPALAPVGYQ
QLEIAGQHLT LAVAPKTCFS MAMAVDAPVP RGWGLTAQLY SLRREGDGGF GDTEALEMLV
RSAGERGADA LGISPIHAMF ANDPRRYSPY SPSSRLFLNS LYAAPGAVLG ERAWLQAIED
AGVSEEMARL ETLSLIDWPS AANAKWKAFH ALYDVFSTGA HPLHEDFNSF RHSGGEALEN
HCRFEALRAE SATLGISENW HEWPDTFKDP RSQAVAQFAE THGEQISFHA FAQWLIARGL
ERAQVAARSS GMRIGLIADL AVGADGAGSQ AWSRQDELLS ALTVGAPPDI LNRAGQSWGI
SAFSPDGLKR NGFRAFIEML RANFAHAGGL RIDHVMGLQR LWVIPQGSPP SEGAYLNFPL
DDMLRLLSLE SWRHKAIVLG EDLGTVPEGL SEKLSARAIL GMRVLLFEQN NGQFKPILDW
SDQALATTST HDLPTLAGWL SELDIEWNAR LGHIDEQHEA QWRDERVREY HSLRRALSQN
IEEMPADSED PEQIIDASVR YLGHTRAPLV LLPMEDALGV EEQANLPGTI DSHPNWRRRL
PGTAASLLDH PHAARRLELL SQSRLQAAER DR
|
|---|
| |