Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3126 |
Symbol | |
ID | 1184783 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3512055 |
End bp | 3513869 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637394484 |
Product | alpha-amylase family protein |
Protein accession | NP_792918 |
Protein GI | 28870299 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.524605 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCCTGC GTACAGACGA TAACTGGCGC CACGGCGCCG TTTTGTTGGA CCCTGAACAC ACCCGGTTTG CCCTCTGGGC ACCGGATGCC TCCTACGTAA GTGTCGAACT GCAGGATGGC CAGTCTCTGG CCATGCTGCC CCAGCCAGAA GGCTGGTTCG TGCTTGAGGC CCGCTGCAAG GCGGGTACTC GATACCGCTT CAAAGTCGAC CATACGCTCG AAGTGCCAGA CCCGGCATCG CGTGCGCAGG TCGATGACGT TCATTCGCAA AGCATCGTGG TCGATCCCCA GGCCTATTCG TGGCAAAACA CCGCATGGAA TGGTCGTCCG TGGCATGAGG CTGTCATCTA TGAGCTGCAC GTCGGCGCAA TGGGCGGCTA TGCAGCGGTC GAGAAGCATC TTGCGCGCCT CGCCGCGCTG GGCATCACCG CCATTGAGCT GATGCCGCTG GCGCAGTTCC CCGGTGATCG CAACTGGGGC TATGACGGCG TTCTGCATTA TGCCCCGCAG TCTTCATACG GCACTCCCGA ACAGCTCAAA CACTTGATCG ACACCGCACA TGGCGTTGGC CTGATGGTGA TTCTGGACGT GGTGTACAAC CACTTCGGTC CGGACGGCAA TTACCTGGGC AGTTACGCCA AGGAGTTTTT CCGCAGCGAC CTGCACACCC CCTGGGGCGA CGCAATTGAT TTCAGGCGCC CGCAAGTGCG GGATTTCTTC GTCGACAATG CCCTCATGTG GCTGCTCGAA TACCGCATCG ACGGGCTGCG CATGGACGCC GTCCACGCCA TTCGCGACGA GACCTTCCTG CCCGAGTTCG CCACCCGCGT GCGCGAGCGG ATCGAACCGT CCAGGCATGT GTGGCTGAAC CTTGAAAACG AGTTCAATCA GGCCAGCCTG CTCGACAAGG GTTTCGACGC GCAATGGGAC GATGACGGGC ACAACACGCT GCACGTGCTG TTGACCGGCG AAACCGATGC CTATTACTCG GATTTCGCCA AAGAGCCGAC CCACAAGCTT GCGCGCCTGC TCGGCGAAGG TTTTGTCTAC CAGGGTGAAC AGACGCGTCA CGGGCACACC CGAGGCGAGC CCAGCGGCCA CCTTGCACCC AGCGCCTTTG TGCTGTTCCT GCAGAACCAC GACCAGATCG GCAACCGTGC GCTCGGCGAG CGTCTGCCAC AGCTCTGTTC CCCTGATGCG CTCAGGGCTG CGACTGCGCT GTTGTTGCTC TCGCCGATGA TTCCGCTGAT GTTCATGGGC GATGAATGGG CCGCGAGCGA ACCCTTCCTG TTTTTCACCA GCCATCACGG CGAGCTGGCC GATGCCGTGC GTGAAGGGCG TCGCAAGGAG TTCGCCGACT TCGCAGCGTT TGCCGATCCA GAAAAGCGCG AGCACATTCC TGATCCCAAC GACATCAAGA CCTTCGAGGC CTCCCGCCCG GCGTTCTCAG CGACAGAACT GCAGACCGAG AAAGGTCTGG AACACCGTCA ATGGGTCGAT TACTACGCGC AATTGCTGGC CTTGCGTCAT CAGGAAATCG TCCCGCGCCT TCAGGGTGCG AGCTTCCTCA ACACCGAGAT CCTTGGCGAC AAGGCGGTCA GTGCACGCTG GACGCTGGGC GACGGCAGTG TGCTGCGTAT CGACCTGAAC CTCAGCGAAC AGCCTGTTGC AACCACGCCT GCGCCACATG CCCGGGAGAT TTTCTCCAGC GCTGCGAAAT CGTCCGAACT TTCCCCTGAC GCAATCCTCA ATCCTTACAC GGCCATTGTC AGCCTGACAG CAAGTGATGT TCTGGAGGAA CAGGATGAAC AATGA
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Protein sequence | MPLRTDDNWR HGAVLLDPEH TRFALWAPDA SYVSVELQDG QSLAMLPQPE GWFVLEARCK AGTRYRFKVD HTLEVPDPAS RAQVDDVHSQ SIVVDPQAYS WQNTAWNGRP WHEAVIYELH VGAMGGYAAV EKHLARLAAL GITAIELMPL AQFPGDRNWG YDGVLHYAPQ SSYGTPEQLK HLIDTAHGVG LMVILDVVYN HFGPDGNYLG SYAKEFFRSD LHTPWGDAID FRRPQVRDFF VDNALMWLLE YRIDGLRMDA VHAIRDETFL PEFATRVRER IEPSRHVWLN LENEFNQASL LDKGFDAQWD DDGHNTLHVL LTGETDAYYS DFAKEPTHKL ARLLGEGFVY QGEQTRHGHT RGEPSGHLAP SAFVLFLQNH DQIGNRALGE RLPQLCSPDA LRAATALLLL SPMIPLMFMG DEWAASEPFL FFTSHHGELA DAVREGRRKE FADFAAFADP EKREHIPDPN DIKTFEASRP AFSATELQTE KGLEHRQWVD YYAQLLALRH QEIVPRLQGA SFLNTEILGD KAVSARWTLG DGSVLRIDLN LSEQPVATTP APHAREIFSS AAKSSELSPD AILNPYTAIV SLTASDVLEE QDEQ
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