| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3118 |
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| Symbol | alkB |
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| ID | 1184775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3502831 |
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| End bp | 3503517 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637394476 |
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| Product | DNA alkylation damage repair protein AlkB |
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| Protein accession | NP_792910 |
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| Protein GI | 28870291 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3145] Alkylated DNA repair protein |
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| TIGRFAM ID | [TIGR00568] DNA alkylation damage repair protein AlkB |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0101889 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACGCA AAGGTGACAC TCCCGCCACT CTGGACCTGT TTGCCGACCA GACACCCCAG
CCTCGACGCG ACGAGCAGAT CGGGCCGGGG TCATGGTTAT TCAGCGGTTT TGCGCTGCCT
GCCATGCCAA CGCTGCTGCT CGCCCTTGAG CAGACGCTGG GCCACTCCCC GTTCCGTCAC
ATGCTCACAC CCGGCGGGCT AAGCATGTCC GCTGCATTGA GCAGTTGCGG ACCGCTGGGC
TGGATCACTG ATCGTCACGG CTATCGCTAC AGCGACGTGG ACCCGCAAAC CGGTCAGCCC
TGGCCTGCGA TGCCGGACGC TTTCATGCAA CTGGCGCAGA GCGCCGCACT CGCCGCCGGC
TATCGCGGTT TTGTGCCTGA CGCCTGCCTG ATCAATCGCT ATATACCCGG CGCAAAGATG
TCGCTGCATC AGGACAAGGA CGAGCACGAC CATCGCTGGC CCGTGGTCTC GGTGTCATTG
GGTATCCCGG CGATCTTCCA GTTCGGCGGC ATGCAACGCA GCGACAAGAC CCGGCGCATT
TCACTGTTTC ATGGTGACGT GGTGGTATGG GGCGGCGAAG ACCGGCTGCG CTTCCACGGC
ATCTTGCCGA TAAAGCAGGC TGAACACCCA TTGCTGGGCG AGCAACGGAT CAACCTGACG
TTCCGAAAGG CCGGTCGCGA TAGCTGA
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| Protein sequence | MQRKGDTPAT LDLFADQTPQ PRRDEQIGPG SWLFSGFALP AMPTLLLALE QTLGHSPFRH
MLTPGGLSMS AALSSCGPLG WITDRHGYRY SDVDPQTGQP WPAMPDAFMQ LAQSAALAAG
YRGFVPDACL INRYIPGAKM SLHQDKDEHD HRWPVVSVSL GIPAIFQFGG MQRSDKTRRI
SLFHGDVVVW GGEDRLRFHG ILPIKQAEHP LLGEQRINLT FRKAGRDS
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