| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3102 |
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| Symbol | |
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| ID | 1184759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3489064 |
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| End bp | 3490233 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637394460 |
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| Product | TPR domain protein |
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| Protein accession | NP_792894 |
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| Protein GI | 28870275 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0131637 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGTAA GATTGACGTT TGACAGCTGC CACCGACTCC CCGAAGCTGC AACCTGTCAA
GCATTGGAAA CCGATATGCC CAGACTGCCT TTCAAGGGGT TATCGCCTCA ACCCACTACT
CGACGTCGCT GGCAGACAGG CGCAGCGGCC GCGGCGCTGC TGACGCTTGC ACTGGCGTTC
TGGTGGTGGC GCACGCCAGT ACAGACAACG CCAGTCAAGT TGAGCCATAC CTATGCCCAG
GCACTGGAGC AGGCACATGA CGGCAAGCCC GGCGCGGCGC GCGTGCTGTA TCAGCAACTG
GCACGCACCG ATCTGTCTGA CGAGCAACGC ATCACGCTGC TCGCCGAATT GAGCGACTAC
CCCAGCCCTC AAGCGCTCAA GCTGCTGGAC GCAGGCCTTG GCGACGCTTC CGGCCAGGTG
CGCAAAGCGG CCATCGACGC CAGCGTGAAG CTGGTCTCCA ACAGCCAGCG CAGCCTGTTA
CTGGGCCCAC TGCTGGACGA CCCCGAGCAA TCCGTCAGGT TTCACGCTAC ACGTGCGCTG
CTCGGCCTGT CACCCGACGA GCTGGGCCTG TACTTTGCCG TCCTGCAACA AAGTGCCGAG
GCGTTTCAGG AGTCGCTCAA AAGCCAGCCG CAGGATGCTC AGAACCAGCT GCAACTGGCC
AGACTGTATC TGCAGACCGG CGATCTCGAA CCTGCGGTCG CGGCGCTGCA ACGGGCCACC
TCACTGGACC CCGGTAATAT CGAAGCGGCA CTCGCCCACA TCGAGCTACT GGACCGCAAG
GGCCAAGCCG AACAGGCGCG CAGTCTGTTT GCCGGGCTGC TGGAGCGCAA CCCCGGCTCG
TCAATCCTCC AGCATGCACT GGGTATGTGG CTGTTGAACC ACGGGCAGGC CGAATTTGCC
TTGCTCAGCC TGGCCAAGGC CACCGAGCTG GCACCCGACA ACAACGACTA TCGCTACGAT
CTGGCGGTTG CCCTGCATTC CTTGAACGAG CTTGAGGCGG CGCAAAAGCA GCTGACGCAG
ATCGTTCAAA ACCAGCCCGC AAACCGCAAG GCCAGGGTGC TGCTGATTCA GTACTGGAAA
GAAACCGGCC AGCTGCAGAA TGTCCAGATA TTGTTGGCGG AGCTTGAGCA GCAGAATCCT
GACGACCCGG TGCTGCAACA GGGGTTGTAG
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| Protein sequence | MPVRLTFDSC HRLPEAATCQ ALETDMPRLP FKGLSPQPTT RRRWQTGAAA AALLTLALAF
WWWRTPVQTT PVKLSHTYAQ ALEQAHDGKP GAARVLYQQL ARTDLSDEQR ITLLAELSDY
PSPQALKLLD AGLGDASGQV RKAAIDASVK LVSNSQRSLL LGPLLDDPEQ SVRFHATRAL
LGLSPDELGL YFAVLQQSAE AFQESLKSQP QDAQNQLQLA RLYLQTGDLE PAVAALQRAT
SLDPGNIEAA LAHIELLDRK GQAEQARSLF AGLLERNPGS SILQHALGMW LLNHGQAEFA
LLSLAKATEL APDNNDYRYD LAVALHSLNE LEAAQKQLTQ IVQNQPANRK ARVLLIQYWK
ETGQLQNVQI LLAELEQQNP DDPVLQQGL
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