Gene PSPTO_3088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3088 
Symbol 
ID1184745 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3470485 
End bp3472113 
Gene Length1629 bp 
Protein Length542 aa 
Translation table11 
GC content61% 
IMG OID637394448 
Productnickel ABC transporter, periplasmic nickel-binding protein, putative 
Protein accessionNP_792882 
Protein GI28870263 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.118464 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGGGC GCCCTCTCCT CACGCGCCTG CTGTTCGCCG CTATTACTGT CACCCTGCTC 
GGCTGTTCGC CTCCGAGCCA GGACAGCCAG GCTGGCAAGA CACTCAAGGT CACTTTTTTC
AGAGACAACA CCACGCTGGT CAGCCTTGAC CCGTTCCAGG TGTACTGGCT GGAGCACCGG
GTGGTGCTGC GTAACGTCGC CGAGTCGCTG ACCGATCAGG ACCCGCAGAC CGGCAACATC
ATTCCCTGGC TGGCAGAACG CTGGGACGTC AGTGACAACG CGCTGGAGTA CACCTTTCAC
TTGCGCAAGG ACGTGACGTT CAGCAATGGC ACGCGCTTCG ATGCCCAGGC CGTAAAGACC
GCCTATGACA CCAACAAGGC GTTCGCCGAC CAGTTGCCGG CCACCTTTGG CGCGACCTAC
CTGAAGGGCT ACGACCACGC TCAAGTGCTG GATGACTTCA CCGTCAAGCT GGTGCTGGCC
AAACCCAATG CCGGGTTCCT GCAAGCCACC TCCACCACCA ACCTCGCCAT ACTCGCTCCG
CAGTCCTACG CACTCAGCGT CAAGGAGCGT TCATTGGGCG CGATCATCGG CACCGGGCCG
TTCGTGCTGG AGCGCTACAC CCCGGAGAGC GGCCTGCGTC TGACCAAGCG CAAGGGCTAT
GCCTGGCCAT CAGCCAACGC ACAAAACAAG GGCGAGGCGC ATCTGGATGC AGTCGACGTC
AGCTATGTGC CGGAAGAAAG TGTGCGCAAC GGCCAGTTCG TTCAGGGCCA GGTGGATATT
CTCTGGCCGC GCACCCCGTT TTCCGAGGTC GATCTGAACC TGTTCAAATC CAGGGGCGCG
ACCATCCAGA GCCGTTCGCT GCCAGGGCCG GCCCTGAACA TGTACCCCAA CACCCGTGGC
AATCGCATCC TCGCCGACCG CAACGTGCGT CTGGCCCTGC AAAAGGCCAT TGACCGCAAA
ACCTATGCAG CCACGGTTTA CAACCCGCAG TTCCCGGTGG TTTCGGGCAT CTACGATGTC
ACCACACCGT TTTACAAAAA CCAGGCTGAC AAACTGGCCT ACGACCCTAA AGGGGCCGAA
CGCCTGCTCG ACGAGGCTGG TTGGGCGAAA AACGCCGACG GCTATCGCTA CAAGGACGGC
AAGCGCCTGA AACTGGCTTA CAACCTGTCG CCCGCCGAAA CCGCTGGTGA CGTGCTGATC
CAGGATCAAC TGCGCAAGGT CGGTATCGAG CTCAAGCTCA ACGTGGTCAC CACCGCCGAG
TGGGCCGCGA ACAATGCCGC AGGCAACTAC GACCTGACCT ACAACTACAT GACCCGCGCC
GACCCGATCA TCCTGCAGAC AATCATCGAC CCGCGCAGCG CCAACAGCTC GACGCTGGCC
ACCAACCTTT ACGCACCGCA AACGCTGCCA AAGGCCCTGG AACTGTTCGA TGCCGGGCTG
ACCGCCACGC GCAGCGAGCA GCGCGCAAAA GCCTATGGCG ACTTGCAGGA TTTGCTGATC
GACGAAGGTT CGGCATTCCC GGTCTATGAG CGGGTCTGGC AAGCCGCCAC TGCAAAAAAC
GTGCGTAACT TCCACTGGAC CGCCGAAGGG TTCGCGCTGT TCAACGACAT CGAGATCGCA
GCGCCATGA
 
Protein sequence
MSGRPLLTRL LFAAITVTLL GCSPPSQDSQ AGKTLKVTFF RDNTTLVSLD PFQVYWLEHR 
VVLRNVAESL TDQDPQTGNI IPWLAERWDV SDNALEYTFH LRKDVTFSNG TRFDAQAVKT
AYDTNKAFAD QLPATFGATY LKGYDHAQVL DDFTVKLVLA KPNAGFLQAT STTNLAILAP
QSYALSVKER SLGAIIGTGP FVLERYTPES GLRLTKRKGY AWPSANAQNK GEAHLDAVDV
SYVPEESVRN GQFVQGQVDI LWPRTPFSEV DLNLFKSRGA TIQSRSLPGP ALNMYPNTRG
NRILADRNVR LALQKAIDRK TYAATVYNPQ FPVVSGIYDV TTPFYKNQAD KLAYDPKGAE
RLLDEAGWAK NADGYRYKDG KRLKLAYNLS PAETAGDVLI QDQLRKVGIE LKLNVVTTAE
WAANNAAGNY DLTYNYMTRA DPIILQTIID PRSANSSTLA TNLYAPQTLP KALELFDAGL
TATRSEQRAK AYGDLQDLLI DEGSAFPVYE RVWQAATAKN VRNFHWTAEG FALFNDIEIA
AP