Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3088 |
Symbol | |
ID | 1184745 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3470485 |
End bp | 3472113 |
Gene Length | 1629 bp |
Protein Length | 542 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637394448 |
Product | nickel ABC transporter, periplasmic nickel-binding protein, putative |
Protein accession | NP_792882 |
Protein GI | 28870263 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.118464 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGGGC GCCCTCTCCT CACGCGCCTG CTGTTCGCCG CTATTACTGT CACCCTGCTC GGCTGTTCGC CTCCGAGCCA GGACAGCCAG GCTGGCAAGA CACTCAAGGT CACTTTTTTC AGAGACAACA CCACGCTGGT CAGCCTTGAC CCGTTCCAGG TGTACTGGCT GGAGCACCGG GTGGTGCTGC GTAACGTCGC CGAGTCGCTG ACCGATCAGG ACCCGCAGAC CGGCAACATC ATTCCCTGGC TGGCAGAACG CTGGGACGTC AGTGACAACG CGCTGGAGTA CACCTTTCAC TTGCGCAAGG ACGTGACGTT CAGCAATGGC ACGCGCTTCG ATGCCCAGGC CGTAAAGACC GCCTATGACA CCAACAAGGC GTTCGCCGAC CAGTTGCCGG CCACCTTTGG CGCGACCTAC CTGAAGGGCT ACGACCACGC TCAAGTGCTG GATGACTTCA CCGTCAAGCT GGTGCTGGCC AAACCCAATG CCGGGTTCCT GCAAGCCACC TCCACCACCA ACCTCGCCAT ACTCGCTCCG CAGTCCTACG CACTCAGCGT CAAGGAGCGT TCATTGGGCG CGATCATCGG CACCGGGCCG TTCGTGCTGG AGCGCTACAC CCCGGAGAGC GGCCTGCGTC TGACCAAGCG CAAGGGCTAT GCCTGGCCAT CAGCCAACGC ACAAAACAAG GGCGAGGCGC ATCTGGATGC AGTCGACGTC AGCTATGTGC CGGAAGAAAG TGTGCGCAAC GGCCAGTTCG TTCAGGGCCA GGTGGATATT CTCTGGCCGC GCACCCCGTT TTCCGAGGTC GATCTGAACC TGTTCAAATC CAGGGGCGCG ACCATCCAGA GCCGTTCGCT GCCAGGGCCG GCCCTGAACA TGTACCCCAA CACCCGTGGC AATCGCATCC TCGCCGACCG CAACGTGCGT CTGGCCCTGC AAAAGGCCAT TGACCGCAAA ACCTATGCAG CCACGGTTTA CAACCCGCAG TTCCCGGTGG TTTCGGGCAT CTACGATGTC ACCACACCGT TTTACAAAAA CCAGGCTGAC AAACTGGCCT ACGACCCTAA AGGGGCCGAA CGCCTGCTCG ACGAGGCTGG TTGGGCGAAA AACGCCGACG GCTATCGCTA CAAGGACGGC AAGCGCCTGA AACTGGCTTA CAACCTGTCG CCCGCCGAAA CCGCTGGTGA CGTGCTGATC CAGGATCAAC TGCGCAAGGT CGGTATCGAG CTCAAGCTCA ACGTGGTCAC CACCGCCGAG TGGGCCGCGA ACAATGCCGC AGGCAACTAC GACCTGACCT ACAACTACAT GACCCGCGCC GACCCGATCA TCCTGCAGAC AATCATCGAC CCGCGCAGCG CCAACAGCTC GACGCTGGCC ACCAACCTTT ACGCACCGCA AACGCTGCCA AAGGCCCTGG AACTGTTCGA TGCCGGGCTG ACCGCCACGC GCAGCGAGCA GCGCGCAAAA GCCTATGGCG ACTTGCAGGA TTTGCTGATC GACGAAGGTT CGGCATTCCC GGTCTATGAG CGGGTCTGGC AAGCCGCCAC TGCAAAAAAC GTGCGTAACT TCCACTGGAC CGCCGAAGGG TTCGCGCTGT TCAACGACAT CGAGATCGCA GCGCCATGA
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Protein sequence | MSGRPLLTRL LFAAITVTLL GCSPPSQDSQ AGKTLKVTFF RDNTTLVSLD PFQVYWLEHR VVLRNVAESL TDQDPQTGNI IPWLAERWDV SDNALEYTFH LRKDVTFSNG TRFDAQAVKT AYDTNKAFAD QLPATFGATY LKGYDHAQVL DDFTVKLVLA KPNAGFLQAT STTNLAILAP QSYALSVKER SLGAIIGTGP FVLERYTPES GLRLTKRKGY AWPSANAQNK GEAHLDAVDV SYVPEESVRN GQFVQGQVDI LWPRTPFSEV DLNLFKSRGA TIQSRSLPGP ALNMYPNTRG NRILADRNVR LALQKAIDRK TYAATVYNPQ FPVVSGIYDV TTPFYKNQAD KLAYDPKGAE RLLDEAGWAK NADGYRYKDG KRLKLAYNLS PAETAGDVLI QDQLRKVGIE LKLNVVTTAE WAANNAAGNY DLTYNYMTRA DPIILQTIID PRSANSSTLA TNLYAPQTLP KALELFDAGL TATRSEQRAK AYGDLQDLLI DEGSAFPVYE RVWQAATAKN VRNFHWTAEG FALFNDIEIA AP
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