Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3087 |
Symbol | hopAB2 |
ID | 1184744 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3468470 |
End bp | 3470131 |
Gene Length | 1662 bp |
Protein Length | 553 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637394447 |
Product | type III effector HopAB2 |
Protein accession | NP_792881 |
Protein GI | 28870262 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00187999 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGGGTA TCAATAGAGC GGGACCATCG GGCGCTTATT TTGTTGGCCA CACAGACCCC GAGCCAGTAT CGGGGCAAGC ACACGGATCC GGCAGCGGCG CCAGCTCCTC GAACAGTCCG CAGGTTCAGC CGCGACCCTC GAATACTCCC CCGTCGAACG CGCCCGCACC GCCGCCAACC GGACGTGAGA GGCTTTCACG ATCCACGGCG CTGTCGCGCC AAACCAGGGA GTGGCTGGAG CAGGGTATGC CTACAGCGGA GGATGCCAGC GTGCGTCGTA GGCCACAGGT GACTGCCGAT GCCGCAACGC CGCGTGCAGA GGCAAGACGC ACGCCGGAGG CAACTGCCGA TGCCAGCGCA CCGCGTAGAG GGGCGGTTGC ACACGCCAAC AGTATCGTTC AGCAATTGGT CAGTGAGGGC GCTGATATTT CGCATACTCG TAACATGCTC CGCAATGCAA TGAATGGCGA CGCAGTCGCT TTTTCTCGAG TAGAACAGAA CATATTTCGC CAGCATTTCC CGAACATGCC CATGCATGGA ATCAGCCGAG ATTCGGAACT CGCTATCGAG CTCCGTGGGG CGCTTCGTCG AGCGGTTCAC CAACAGGCGG CGTCAGCGCC AGTGAGGTCG CCCACGCCAA CACCGGCCAG CCCTGCGGCA TCATCATCGG GCAGCAGTCA GCGTTCTTTA TTTGGACGGT TTGCCCGTTT GATGGCGCCA AACCAGGGAC GGTCGTCGAA CACTGCCGCC TCTCAGACGC CGGTCGACAG GAGCCCGCCA CGCGTCAACC AAAGACCCAT ACGCGTCGAC AGGGCTGCGA TGCGTAATCG TGGCAATGAC GAGGCGGACG CCGCGCTGCG GGGGTTAGTA CAACAGGGGG TCAATTTAGA GCACCTGCGC ACGGCCCTTG AAAGACATGT AATGCAGCGC CTCCCTATCC CCCTCGATAT AGGCAGCGCG TTGCAGAATG TGGGAATTAA CCCAAGTATC GACTTGGGGG AAAGCCTTGT GCAACATCCC CTGCTGAATT TGAATGTAGC GTTGAATCGC ATGCTGGGGC TGCGTCCCAG CGCTGAAAGA GCGCCTCGTC CAGCCGTCCC CGTGGCTCCC GCGACCGCCT CCAGGCGACC GGATGGTACG CGTGCAACAC GATTGCGGGT GATGCCGGAG CGGGAGGATT ACGAAAATAA TGTGGCTTAT GGAGTGCGCT TGCTTAACCT GAACCCGGGG GTGGGGGTAA GGCAGGCTGT TGCGGCCTTT GTAACCGACC GGGCTGAGCG GCCAGCAGTG GTGGCTAATA TCCGGGCAGC CCTGGACCCT ATCGCGTCAC AATTCAGTCA GCTGCGCACA ATTTCGAAGG CCGATGCTGA ATCTGAAGAG CTGGGTTTTA AGGATGCGGC AGATCATCAC ACGGATGACG TGACGCACTG TCTTTTTGGC GGAGAATTGT CGCTGAGTAA TCCGGATCAG CAGGTGATCG GTTTGGCGGG TAATCCGACG GACACGTCGC AGCCTTACAG CCAAGAGGGA AATAAGGACC TGGCGTTCAT GGATATGAAA AAACTTGCCC AATTCCTCGC AGGCAAGCCT GAGCATCCGA TGACCAGAGA AACGCTTAAC GCCGAAAATA TCGCCAAGTA TGCTTTTAGA ATAGTCCCCT GA
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Protein sequence | MAGINRAGPS GAYFVGHTDP EPVSGQAHGS GSGASSSNSP QVQPRPSNTP PSNAPAPPPT GRERLSRSTA LSRQTREWLE QGMPTAEDAS VRRRPQVTAD AATPRAEARR TPEATADASA PRRGAVAHAN SIVQQLVSEG ADISHTRNML RNAMNGDAVA FSRVEQNIFR QHFPNMPMHG ISRDSELAIE LRGALRRAVH QQAASAPVRS PTPTPASPAA SSSGSSQRSL FGRFARLMAP NQGRSSNTAA SQTPVDRSPP RVNQRPIRVD RAAMRNRGND EADAALRGLV QQGVNLEHLR TALERHVMQR LPIPLDIGSA LQNVGINPSI DLGESLVQHP LLNLNVALNR MLGLRPSAER APRPAVPVAP ATASRRPDGT RATRLRVMPE REDYENNVAY GVRLLNLNPG VGVRQAVAAF VTDRAERPAV VANIRAALDP IASQFSQLRT ISKADAESEE LGFKDAADHH TDDVTHCLFG GELSLSNPDQ QVIGLAGNPT DTSQPYSQEG NKDLAFMDMK KLAQFLAGKP EHPMTRETLN AENIAKYAFR IVP
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