Gene PSPTO_3087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3087 
SymbolhopAB2 
ID1184744 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3468470 
End bp3470131 
Gene Length1662 bp 
Protein Length553 aa 
Translation table11 
GC content59% 
IMG OID637394447 
Producttype III effector HopAB2 
Protein accessionNP_792881 
Protein GI28870262 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00187999 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGGGTA TCAATAGAGC GGGACCATCG GGCGCTTATT TTGTTGGCCA CACAGACCCC 
GAGCCAGTAT CGGGGCAAGC ACACGGATCC GGCAGCGGCG CCAGCTCCTC GAACAGTCCG
CAGGTTCAGC CGCGACCCTC GAATACTCCC CCGTCGAACG CGCCCGCACC GCCGCCAACC
GGACGTGAGA GGCTTTCACG ATCCACGGCG CTGTCGCGCC AAACCAGGGA GTGGCTGGAG
CAGGGTATGC CTACAGCGGA GGATGCCAGC GTGCGTCGTA GGCCACAGGT GACTGCCGAT
GCCGCAACGC CGCGTGCAGA GGCAAGACGC ACGCCGGAGG CAACTGCCGA TGCCAGCGCA
CCGCGTAGAG GGGCGGTTGC ACACGCCAAC AGTATCGTTC AGCAATTGGT CAGTGAGGGC
GCTGATATTT CGCATACTCG TAACATGCTC CGCAATGCAA TGAATGGCGA CGCAGTCGCT
TTTTCTCGAG TAGAACAGAA CATATTTCGC CAGCATTTCC CGAACATGCC CATGCATGGA
ATCAGCCGAG ATTCGGAACT CGCTATCGAG CTCCGTGGGG CGCTTCGTCG AGCGGTTCAC
CAACAGGCGG CGTCAGCGCC AGTGAGGTCG CCCACGCCAA CACCGGCCAG CCCTGCGGCA
TCATCATCGG GCAGCAGTCA GCGTTCTTTA TTTGGACGGT TTGCCCGTTT GATGGCGCCA
AACCAGGGAC GGTCGTCGAA CACTGCCGCC TCTCAGACGC CGGTCGACAG GAGCCCGCCA
CGCGTCAACC AAAGACCCAT ACGCGTCGAC AGGGCTGCGA TGCGTAATCG TGGCAATGAC
GAGGCGGACG CCGCGCTGCG GGGGTTAGTA CAACAGGGGG TCAATTTAGA GCACCTGCGC
ACGGCCCTTG AAAGACATGT AATGCAGCGC CTCCCTATCC CCCTCGATAT AGGCAGCGCG
TTGCAGAATG TGGGAATTAA CCCAAGTATC GACTTGGGGG AAAGCCTTGT GCAACATCCC
CTGCTGAATT TGAATGTAGC GTTGAATCGC ATGCTGGGGC TGCGTCCCAG CGCTGAAAGA
GCGCCTCGTC CAGCCGTCCC CGTGGCTCCC GCGACCGCCT CCAGGCGACC GGATGGTACG
CGTGCAACAC GATTGCGGGT GATGCCGGAG CGGGAGGATT ACGAAAATAA TGTGGCTTAT
GGAGTGCGCT TGCTTAACCT GAACCCGGGG GTGGGGGTAA GGCAGGCTGT TGCGGCCTTT
GTAACCGACC GGGCTGAGCG GCCAGCAGTG GTGGCTAATA TCCGGGCAGC CCTGGACCCT
ATCGCGTCAC AATTCAGTCA GCTGCGCACA ATTTCGAAGG CCGATGCTGA ATCTGAAGAG
CTGGGTTTTA AGGATGCGGC AGATCATCAC ACGGATGACG TGACGCACTG TCTTTTTGGC
GGAGAATTGT CGCTGAGTAA TCCGGATCAG CAGGTGATCG GTTTGGCGGG TAATCCGACG
GACACGTCGC AGCCTTACAG CCAAGAGGGA AATAAGGACC TGGCGTTCAT GGATATGAAA
AAACTTGCCC AATTCCTCGC AGGCAAGCCT GAGCATCCGA TGACCAGAGA AACGCTTAAC
GCCGAAAATA TCGCCAAGTA TGCTTTTAGA ATAGTCCCCT GA
 
Protein sequence
MAGINRAGPS GAYFVGHTDP EPVSGQAHGS GSGASSSNSP QVQPRPSNTP PSNAPAPPPT 
GRERLSRSTA LSRQTREWLE QGMPTAEDAS VRRRPQVTAD AATPRAEARR TPEATADASA
PRRGAVAHAN SIVQQLVSEG ADISHTRNML RNAMNGDAVA FSRVEQNIFR QHFPNMPMHG
ISRDSELAIE LRGALRRAVH QQAASAPVRS PTPTPASPAA SSSGSSQRSL FGRFARLMAP
NQGRSSNTAA SQTPVDRSPP RVNQRPIRVD RAAMRNRGND EADAALRGLV QQGVNLEHLR
TALERHVMQR LPIPLDIGSA LQNVGINPSI DLGESLVQHP LLNLNVALNR MLGLRPSAER
APRPAVPVAP ATASRRPDGT RATRLRVMPE REDYENNVAY GVRLLNLNPG VGVRQAVAAF
VTDRAERPAV VANIRAALDP IASQFSQLRT ISKADAESEE LGFKDAADHH TDDVTHCLFG
GELSLSNPDQ QVIGLAGNPT DTSQPYSQEG NKDLAFMDMK KLAQFLAGKP EHPMTRETLN
AENIAKYAFR IVP