Gene PSPTO_3086 details

Gene Information

• Locus tag: PSPTO_3086
• ID: 1184743
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 3467721
• End bp: 3468359
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637394446
• Product: transcriptional regulator, putative
• Protein accession: NP_792880
• Protein GI: 28870261
• COG category: [K] Transcription
• COG ID: [COG1396] Predicted transcriptional regulators

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0196484
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTTTC TACACACCGT TGAGGGTCAG GAACAAACAG CACAGGGATC CGGTGACAGC 
ATCCAGAGCG ATGAGGACCT GATAGGCCCC CGGGTCGCGC GCAACCTGCA ACGGTTGCGC 
AGCAAACGCT ATTTATCCAT GGACGCACTC GCCCGCCTGA CCGGCGTCAG CAGAGCAATG 
CTTGCGCAAA TCGAGTCAGG CCGCAGCGTG CCGTCGATCA AGGTGCTGTG CAAGATTGCC 
AAAGGCTTGA AGGTCTCGAT CGCTGCATTT CTCGAGGACC GCGCCTTTGA AGGCGTGGAA 
CTTTTGCCTG CGCAACACAG CAAGCGACTG GTCAGTGCCA GTGGTGTGTT TGTCAGTCGG 
GCGTTGTTCC CCTTCGACAT GGCACGCCAA TCTGAATTTT ACGAGATCCG TCTTGGTGCA 
TTAGGGGAAG AAATCTCCAA CGGGCATGGC CCAGGGGTGC AGGAAAACCT CGTAGTCGCC 
CAGGGCGTGC TCGAAGTCAG CGTCAATGAA GAGCGCTACT TGTTGTCCAC CGGCGACTCG 
ATTCTGTTCT ACGCCGACCA GCCGCACCGC TACCGAAACC CCGCCGACAG TGAAGCGTTG 
GCGTTTCTGG TGATGACCTA CCCCGAGCGC ATGGACTGA 

 

Protein sequence

MNFLHTVEGQ EQTAQGSGDS IQSDEDLIGP RVARNLQRLR SKRYLSMDAL ARLTGVSRAM 
LAQIESGRSV PSIKVLCKIA KGLKVSIAAF LEDRAFEGVE LLPAQHSKRL VSASGVFVSR 
ALFPFDMARQ SEFYEIRLGA LGEEISNGHG PGVQENLVVA QGVLEVSVNE ERYLLSTGDS 
ILFYADQPHR YRNPADSEAL AFLVMTYPER MD