| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3082 |
|---|
| Symbol | |
|---|
| ID | 1184739 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3464325 |
|---|
| End bp | 3465197 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637394442 |
|---|
| Product | glutamine/glutamate ABC transporter, periplasmic glutamine/glutamate-binding protein |
|---|
| Protein accession | NP_792876 |
|---|
| Protein GI | 28870257 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.171544 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCTTCA AGACTGCCCT CGTTTTACCG TTGATTGCCT TTACTCTGCT GGCCGGCTGC
GACAAGCCCG CCGAACAGAA GCCGGTCGCC AAGGCTGCAC CTTCACCATC CACCAGCTAC
CTCGAAACCA TCAAGGCCCG TGACAAACTG ATTGTCGGCG TGTTCAGCGA CAAACCGCCT
TTTGGCTTCG TCAACGAACA AGGTCAGTAC GTCGGTTTCG ACACCGACCT GGGCAAGCGT
TTTGCCAAGG ACCTGCTGGG TGACGAGAAG AAAGTCGAGT TCGTGGTGGT CGAGCCTGCC
AGCCGCATCC CGTTTTTGCA GAGCGACAAG GTCGATCTGA TTCTGGCTAA CATGACCGTC
ACCCCGGAAC GCGCCGAGGC CGTGGACTTC ACCCACCCCA ACCTGCGCGT TGCGGTGCAG
GCGCTGGTGC CTGAAGCCAG CCCGGTGAAG ACGCTGGACG ATCTGGCAAG CAAGACCACC
ATCGTTACCA CCGGCACCAC CGCGGATATA TGGCTGACGA AAAACCACCC GGACTGGAAA
GTGCTGAAGT TCGAGAAAAA CTCCGAGTCC CTGCAAGCGC TGGCCAATGG CCGTGGCGAC
GCTTATGCGC AGGACAACCT GGTGCTGTTC AGCTGGGCGA AGAAAAACCC CGGCTACCGC
GTGCTGGAGC AAAAGCTGGG TGACGAAGCG CCCATCGCTC CAGCCGTCAA GAAAGGCAAC
ATTGAACTGC GTGACTGGGT CAACACCGAG CTGACCAGAC TGGGCGAAGA GAAATACCTG
CTCAAACTCT ACGACCAGTA TGTGCGCCCT GAGCTGGCCG AAGGCACTGA CCCTAATGCG
GTCATCGTCG AGGGTGGCAA CTGGAAGCCT TGA
|
|---|
| Protein sequence | MSFKTALVLP LIAFTLLAGC DKPAEQKPVA KAAPSPSTSY LETIKARDKL IVGVFSDKPP
FGFVNEQGQY VGFDTDLGKR FAKDLLGDEK KVEFVVVEPA SRIPFLQSDK VDLILANMTV
TPERAEAVDF THPNLRVAVQ ALVPEASPVK TLDDLASKTT IVTTGTTADI WLTKNHPDWK
VLKFEKNSES LQALANGRGD AYAQDNLVLF SWAKKNPGYR VLEQKLGDEA PIAPAVKKGN
IELRDWVNTE LTRLGEEKYL LKLYDQYVRP ELAEGTDPNA VIVEGGNWKP
|
|---|
| |