Gene PSPTO_3071 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3071 
Symbol 
ID1184728 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3453003 
End bp3454862 
Gene Length1860 bp 
Protein Length619 aa 
Translation table11 
GC content61% 
IMG OID637394431 
ProductABC transporter, ATP-binding/permease protein 
Protein accessionNP_792865 
Protein GI28870246 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0688673 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTCGCG CATTTGAAAA ATGGCTCGAC CCCTTCCCGC CCGACGAAGT GCCGCCGCCG 
CCTGACGGTC TGACGCGGTT TCTGTGGGCC TGCACTCGGG GCGCACGCGG CTATGTGCTT
GCGCTCGCGC TGCTCAGTGC TGGCGTGTCG ATTTACGAAG CCTGGCTGTT TTCGTTCCTC
GGGCAGGTCG TGGACCTGCT CTCGACCTGG CAGGCCGGCG GCGATGCGGC CTTGCAGGAA
AGCCGCGTGC TGTGGAGCAT CGGCGTCATA TTGCTGACCA GCATTGCGCT GGTGGCATTG
CGCACCATGG TTCAGCATCA GGTGTTGGCA ATCAACCTGC CGCTGCGGCT GCGCTGGGAT
TTCCACCGCC TGATGCTGCG GCAAAGCCTT TCGTTCTTCT CCGATGAGTT CTCTGGCCGG
GTCACGACCA AGGTGATGCA GACGGCGCTG TCTGTGCGCG ATGTGCTGTT CACTATCATC
GAGATCGCAC CGGGGATCGG CGTGTACTTC ATCGCGATCA TCGCACTGGC CGGCGGCTTT
GACCTGAAAC TGATGCTGCC TTTCATTGCC TGGATCGTGT TGTTCGGGCT GGCCATGCTG
CACTTCGTGC CGCGCCTGGG CAAGGTCGGG CAAGAACAGG CCAATGCGCG GTCATCAATG
ACCGGGCGTA TCTCGGATGC CTACACCAAT ATCACCACGG TGAAACTGTT CTCCCACTCC
AAACGCGAAG CGCATTTCGC ACGCGCGGCG ATGGAGGATT TCAAGCAGAC CGGCTTGCGC
CAGATGCGCC TGGTCAGCCA GTTCGAGATC GTCAATCAGG CACTCGTGGT CGCGTTGATC
ATGGCTGCGG GCGGTTATGC CCTGTGGCTG TGGCATCAGG GTCAGGTCGG CACCGGCGCG
GTGGCGGCGA TTACCGCCAT GGCATTACGC ATTAATGGCA TGTCGCACTG GATCATGTGG
CAGATGACCT CGCTGTTCGA GAACATCGGC ACCGTACAAG ACGGTATGGC AACCCTGACC
CGCGGCCCCA AGGTGCAGGA TGCACCTGAC GCGGCAGTTC TGAAGACCAC CGGCGGCGCG
GTGAGCTTCG ACAATGTGGG CTTCAACTAC AACGGCGAAC GTCAGGTACT CGATGGCCTG
AACCTGAGCA TTCGTGCAGG CGAGAAAATC GGGCTGGTGG GTCGCTCCGG CGCCGGTAAA
TCCACGCTCA TTAACCTGCT GTTGCGCTTC TACGACGTGG ACAAGGGCGA GATTCGCATC
GATGGGCAGA ACATCGCGCA CGTCACCCAG GACAGTCTGC GCAGCGCCAT CGGCATGGTC
ACTCAGGACA CGTCCCTGCT GCACCGGTCC ATTCGCGACA ACATCGCCTA TGGCCGCCCG
GATGCAACCG ACGAACAGGT TCGCAGTGCC GCAGCGAATG CCCAGGCCGA CGGGTTCATC
AGCCAGTTGA GCGACAAGCA GGGTCACAGC GGCTACGACA CCCTGGTGGG CGAGCGCGGT
ATCAAGCTTT CGGGCGGCCA GCGTCAACGT GTCGCGATTG CCAGAGTGAT GCTGAAAAAC
GCTCCGATCC TGCTGCTTGA CGAGGCTACC AGTGCCCTCG ACTCAGAAGT CGAAGTGGCC
ATTCAGGAAA GCCTCGATGA AATGATGCAG GGCAAGACCG TAATCGCCAT CGCCCATCGG
CTGTCCACCA TTGCGGCCAT GGACCGGCTC ATTGTCATGG ATGACGGGCG CATCATCGAG
CAAGGCACTC ACACCGAACT GCTCGCGAAA AATGGTGTGT ATGCGCGGTT GTGGCATCAC
CAGAGTGGCG GATTTCTGGG GGAGGATCAG GGCGTGGCCG AGCCCGTGGA CCAGGCGTGA
 
Protein sequence
MLRAFEKWLD PFPPDEVPPP PDGLTRFLWA CTRGARGYVL ALALLSAGVS IYEAWLFSFL 
GQVVDLLSTW QAGGDAALQE SRVLWSIGVI LLTSIALVAL RTMVQHQVLA INLPLRLRWD
FHRLMLRQSL SFFSDEFSGR VTTKVMQTAL SVRDVLFTII EIAPGIGVYF IAIIALAGGF
DLKLMLPFIA WIVLFGLAML HFVPRLGKVG QEQANARSSM TGRISDAYTN ITTVKLFSHS
KREAHFARAA MEDFKQTGLR QMRLVSQFEI VNQALVVALI MAAGGYALWL WHQGQVGTGA
VAAITAMALR INGMSHWIMW QMTSLFENIG TVQDGMATLT RGPKVQDAPD AAVLKTTGGA
VSFDNVGFNY NGERQVLDGL NLSIRAGEKI GLVGRSGAGK STLINLLLRF YDVDKGEIRI
DGQNIAHVTQ DSLRSAIGMV TQDTSLLHRS IRDNIAYGRP DATDEQVRSA AANAQADGFI
SQLSDKQGHS GYDTLVGERG IKLSGGQRQR VAIARVMLKN APILLLDEAT SALDSEVEVA
IQESLDEMMQ GKTVIAIAHR LSTIAAMDRL IVMDDGRIIE QGTHTELLAK NGVYARLWHH
QSGGFLGEDQ GVAEPVDQA