Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3071 |
Symbol | |
ID | 1184728 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3453003 |
End bp | 3454862 |
Gene Length | 1860 bp |
Protein Length | 619 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637394431 |
Product | ABC transporter, ATP-binding/permease protein |
Protein accession | NP_792865 |
Protein GI | 28870246 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0688673 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCTTCGCG CATTTGAAAA ATGGCTCGAC CCCTTCCCGC CCGACGAAGT GCCGCCGCCG CCTGACGGTC TGACGCGGTT TCTGTGGGCC TGCACTCGGG GCGCACGCGG CTATGTGCTT GCGCTCGCGC TGCTCAGTGC TGGCGTGTCG ATTTACGAAG CCTGGCTGTT TTCGTTCCTC GGGCAGGTCG TGGACCTGCT CTCGACCTGG CAGGCCGGCG GCGATGCGGC CTTGCAGGAA AGCCGCGTGC TGTGGAGCAT CGGCGTCATA TTGCTGACCA GCATTGCGCT GGTGGCATTG CGCACCATGG TTCAGCATCA GGTGTTGGCA ATCAACCTGC CGCTGCGGCT GCGCTGGGAT TTCCACCGCC TGATGCTGCG GCAAAGCCTT TCGTTCTTCT CCGATGAGTT CTCTGGCCGG GTCACGACCA AGGTGATGCA GACGGCGCTG TCTGTGCGCG ATGTGCTGTT CACTATCATC GAGATCGCAC CGGGGATCGG CGTGTACTTC ATCGCGATCA TCGCACTGGC CGGCGGCTTT GACCTGAAAC TGATGCTGCC TTTCATTGCC TGGATCGTGT TGTTCGGGCT GGCCATGCTG CACTTCGTGC CGCGCCTGGG CAAGGTCGGG CAAGAACAGG CCAATGCGCG GTCATCAATG ACCGGGCGTA TCTCGGATGC CTACACCAAT ATCACCACGG TGAAACTGTT CTCCCACTCC AAACGCGAAG CGCATTTCGC ACGCGCGGCG ATGGAGGATT TCAAGCAGAC CGGCTTGCGC CAGATGCGCC TGGTCAGCCA GTTCGAGATC GTCAATCAGG CACTCGTGGT CGCGTTGATC ATGGCTGCGG GCGGTTATGC CCTGTGGCTG TGGCATCAGG GTCAGGTCGG CACCGGCGCG GTGGCGGCGA TTACCGCCAT GGCATTACGC ATTAATGGCA TGTCGCACTG GATCATGTGG CAGATGACCT CGCTGTTCGA GAACATCGGC ACCGTACAAG ACGGTATGGC AACCCTGACC CGCGGCCCCA AGGTGCAGGA TGCACCTGAC GCGGCAGTTC TGAAGACCAC CGGCGGCGCG GTGAGCTTCG ACAATGTGGG CTTCAACTAC AACGGCGAAC GTCAGGTACT CGATGGCCTG AACCTGAGCA TTCGTGCAGG CGAGAAAATC GGGCTGGTGG GTCGCTCCGG CGCCGGTAAA TCCACGCTCA TTAACCTGCT GTTGCGCTTC TACGACGTGG ACAAGGGCGA GATTCGCATC GATGGGCAGA ACATCGCGCA CGTCACCCAG GACAGTCTGC GCAGCGCCAT CGGCATGGTC ACTCAGGACA CGTCCCTGCT GCACCGGTCC ATTCGCGACA ACATCGCCTA TGGCCGCCCG GATGCAACCG ACGAACAGGT TCGCAGTGCC GCAGCGAATG CCCAGGCCGA CGGGTTCATC AGCCAGTTGA GCGACAAGCA GGGTCACAGC GGCTACGACA CCCTGGTGGG CGAGCGCGGT ATCAAGCTTT CGGGCGGCCA GCGTCAACGT GTCGCGATTG CCAGAGTGAT GCTGAAAAAC GCTCCGATCC TGCTGCTTGA CGAGGCTACC AGTGCCCTCG ACTCAGAAGT CGAAGTGGCC ATTCAGGAAA GCCTCGATGA AATGATGCAG GGCAAGACCG TAATCGCCAT CGCCCATCGG CTGTCCACCA TTGCGGCCAT GGACCGGCTC ATTGTCATGG ATGACGGGCG CATCATCGAG CAAGGCACTC ACACCGAACT GCTCGCGAAA AATGGTGTGT ATGCGCGGTT GTGGCATCAC CAGAGTGGCG GATTTCTGGG GGAGGATCAG GGCGTGGCCG AGCCCGTGGA CCAGGCGTGA
|
Protein sequence | MLRAFEKWLD PFPPDEVPPP PDGLTRFLWA CTRGARGYVL ALALLSAGVS IYEAWLFSFL GQVVDLLSTW QAGGDAALQE SRVLWSIGVI LLTSIALVAL RTMVQHQVLA INLPLRLRWD FHRLMLRQSL SFFSDEFSGR VTTKVMQTAL SVRDVLFTII EIAPGIGVYF IAIIALAGGF DLKLMLPFIA WIVLFGLAML HFVPRLGKVG QEQANARSSM TGRISDAYTN ITTVKLFSHS KREAHFARAA MEDFKQTGLR QMRLVSQFEI VNQALVVALI MAAGGYALWL WHQGQVGTGA VAAITAMALR INGMSHWIMW QMTSLFENIG TVQDGMATLT RGPKVQDAPD AAVLKTTGGA VSFDNVGFNY NGERQVLDGL NLSIRAGEKI GLVGRSGAGK STLINLLLRF YDVDKGEIRI DGQNIAHVTQ DSLRSAIGMV TQDTSLLHRS IRDNIAYGRP DATDEQVRSA AANAQADGFI SQLSDKQGHS GYDTLVGERG IKLSGGQRQR VAIARVMLKN APILLLDEAT SALDSEVEVA IQESLDEMMQ GKTVIAIAHR LSTIAAMDRL IVMDDGRIIE QGTHTELLAK NGVYARLWHH QSGGFLGEDQ GVAEPVDQA
|
| |