Gene PSPTO_3052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3052 
Symbol 
ID1184709 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3433170 
End bp3434411 
Gene Length1242 bp 
Protein Length413 aa 
Translation table11 
GC content61% 
IMG OID637394412 
Productmajor facilitator family transporter 
Protein accessionNP_792846 
Protein GI28870227 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0742962 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTCACA ACAATAATAA AGCCAGTTAT GAAAATGTCC TGCTCTGCGT GTTGTTCCTG 
ACGTTCGGTT TTGTGTTTTT CGACCGTCTG GCGCTGTCCT TTCTGTTTCC GTTCATGGCG
CGAGAGCTGC AACTGAGCAA CAGCCACCTT GGCATGTTGT CTTCGGTGCT GGCATTGGCC
TGGGCGATTT CCGGGACGCT AGTAGGCGCG TGGTCGGATC GCCGAGGGGT ACGCAAGCCG
CTGCTGATTG CCGCGGTCAT CCTGTTTTCG CTGTGCTCAG CCCTCTCGGG GCTGGTCGCG
GGGTTCCTCA GCCTGTTGCT GTTTCGCGCC ATCATGGGGT TGGCCGAGGG GCCCATCCTG
CCGTTGTCCC AATCGATGAT GGTGGAGGCG TCATCGCCGC ATCGCCGGGG CTTGAACATG
GGCTTGCTTC AAGGCTCGGC GGCGGGTCTG TTGGGCGCGG TCATCGGCCC TCCGGTGTTG
ATTGCCCTGG CGCAGGCCTA TGGCTGGCGG CATGCGTTCA TTGTCTCGCT GCTACCAGGA
CTGCTCATCG CCTGGCTTAT CTGGCGTTAC GTGCGCCACG ATGAACCTCG TCAGGCTCCG
GTGAGTAACG TCAAGCTCAC CGGGCATCGC CTGGCACTGC TTAAAAGTCG CAATATCGTG
CTGTGCACAT TGATCAGTTG CGTATTTCTG ACCTGGTTCG TGATCCTGAT CTCCTTTACC
CCGACGTTTC TGGTCAGCGT CCGCGGTTAC AGCGCGCCGA GCATGGGCAC GATCATGAGT
TGCCTGGGTG CCGCCTGGGT TGTATGGGGG TTTGCGGTGC CCAGCATTTC CGACCGCATC
GGCCGCCGTC CGACGCTGGT GCTGTTCTCG CTGATTGCGG CCTGCTGCCC GATAGCCCTG
CTATTCGCGC CTTCGCCGAT GATACTCGGC GTGCTGATGG TGCTCACCTT CACCGGGCTT
GGCTGCTTCA CGCTGTTCAT GTCCACCATT CCAGCCGAAA CCGTCCCGCG TGAAGTCATG
GCCACGGCTC TGGGCATGAT CATGGGCATT GGCGAACTGG TGGGAGGCTT CGTGGCGCCG
ACCATTGCCG GGGTTGCCGC CGATCAGTTC GGGTTGTCGA TTGTGATGTG GATCTCCTGC
TGCGGCGCCG TGCTGGCTGC GGGGCTGTCG CTGTTGCTAA AGGAAACCGC GCCCACCGTG
CTGCAACGCC GATCAGTGCA AGCCTGCACA CAGCGTGCGT GA
 
Protein sequence
MAHNNNKASY ENVLLCVLFL TFGFVFFDRL ALSFLFPFMA RELQLSNSHL GMLSSVLALA 
WAISGTLVGA WSDRRGVRKP LLIAAVILFS LCSALSGLVA GFLSLLLFRA IMGLAEGPIL
PLSQSMMVEA SSPHRRGLNM GLLQGSAAGL LGAVIGPPVL IALAQAYGWR HAFIVSLLPG
LLIAWLIWRY VRHDEPRQAP VSNVKLTGHR LALLKSRNIV LCTLISCVFL TWFVILISFT
PTFLVSVRGY SAPSMGTIMS CLGAAWVVWG FAVPSISDRI GRRPTLVLFS LIAACCPIAL
LFAPSPMILG VLMVLTFTGL GCFTLFMSTI PAETVPREVM ATALGMIMGI GELVGGFVAP
TIAGVAADQF GLSIVMWISC CGAVLAAGLS LLLKETAPTV LQRRSVQACT QRA