Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3052 |
Symbol | |
ID | 1184709 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3433170 |
End bp | 3434411 |
Gene Length | 1242 bp |
Protein Length | 413 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637394412 |
Product | major facilitator family transporter |
Protein accession | NP_792846 |
Protein GI | 28870227 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0742962 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTCACA ACAATAATAA AGCCAGTTAT GAAAATGTCC TGCTCTGCGT GTTGTTCCTG ACGTTCGGTT TTGTGTTTTT CGACCGTCTG GCGCTGTCCT TTCTGTTTCC GTTCATGGCG CGAGAGCTGC AACTGAGCAA CAGCCACCTT GGCATGTTGT CTTCGGTGCT GGCATTGGCC TGGGCGATTT CCGGGACGCT AGTAGGCGCG TGGTCGGATC GCCGAGGGGT ACGCAAGCCG CTGCTGATTG CCGCGGTCAT CCTGTTTTCG CTGTGCTCAG CCCTCTCGGG GCTGGTCGCG GGGTTCCTCA GCCTGTTGCT GTTTCGCGCC ATCATGGGGT TGGCCGAGGG GCCCATCCTG CCGTTGTCCC AATCGATGAT GGTGGAGGCG TCATCGCCGC ATCGCCGGGG CTTGAACATG GGCTTGCTTC AAGGCTCGGC GGCGGGTCTG TTGGGCGCGG TCATCGGCCC TCCGGTGTTG ATTGCCCTGG CGCAGGCCTA TGGCTGGCGG CATGCGTTCA TTGTCTCGCT GCTACCAGGA CTGCTCATCG CCTGGCTTAT CTGGCGTTAC GTGCGCCACG ATGAACCTCG TCAGGCTCCG GTGAGTAACG TCAAGCTCAC CGGGCATCGC CTGGCACTGC TTAAAAGTCG CAATATCGTG CTGTGCACAT TGATCAGTTG CGTATTTCTG ACCTGGTTCG TGATCCTGAT CTCCTTTACC CCGACGTTTC TGGTCAGCGT CCGCGGTTAC AGCGCGCCGA GCATGGGCAC GATCATGAGT TGCCTGGGTG CCGCCTGGGT TGTATGGGGG TTTGCGGTGC CCAGCATTTC CGACCGCATC GGCCGCCGTC CGACGCTGGT GCTGTTCTCG CTGATTGCGG CCTGCTGCCC GATAGCCCTG CTATTCGCGC CTTCGCCGAT GATACTCGGC GTGCTGATGG TGCTCACCTT CACCGGGCTT GGCTGCTTCA CGCTGTTCAT GTCCACCATT CCAGCCGAAA CCGTCCCGCG TGAAGTCATG GCCACGGCTC TGGGCATGAT CATGGGCATT GGCGAACTGG TGGGAGGCTT CGTGGCGCCG ACCATTGCCG GGGTTGCCGC CGATCAGTTC GGGTTGTCGA TTGTGATGTG GATCTCCTGC TGCGGCGCCG TGCTGGCTGC GGGGCTGTCG CTGTTGCTAA AGGAAACCGC GCCCACCGTG CTGCAACGCC GATCAGTGCA AGCCTGCACA CAGCGTGCGT GA
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Protein sequence | MAHNNNKASY ENVLLCVLFL TFGFVFFDRL ALSFLFPFMA RELQLSNSHL GMLSSVLALA WAISGTLVGA WSDRRGVRKP LLIAAVILFS LCSALSGLVA GFLSLLLFRA IMGLAEGPIL PLSQSMMVEA SSPHRRGLNM GLLQGSAAGL LGAVIGPPVL IALAQAYGWR HAFIVSLLPG LLIAWLIWRY VRHDEPRQAP VSNVKLTGHR LALLKSRNIV LCTLISCVFL TWFVILISFT PTFLVSVRGY SAPSMGTIMS CLGAAWVVWG FAVPSISDRI GRRPTLVLFS LIAACCPIAL LFAPSPMILG VLMVLTFTGL GCFTLFMSTI PAETVPREVM ATALGMIMGI GELVGGFVAP TIAGVAADQF GLSIVMWISC CGAVLAAGLS LLLKETAPTV LQRRSVQACT QRA
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