| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3046 |
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| Symbol | |
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| ID | 1184703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3425886 |
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| End bp | 3427889 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637394406 |
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| Product | sigma-54 dependent transcriptional regulator |
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| Protein accession | NP_792840 |
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| Protein GI | 28870221 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.559665 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCCGC AGCCAATGGC TTTCAGCGTA CAAGACCTTG ATTACCTCAC TGCGCTAGAC
CCGACCTCGC TGAGCGAAGG GCCGATTGCG GCGCTGGAGA ACGCCTGGCT GGCTTGCCTG
AGCGGATGCA CCGAACAACC TGTTGGGGTG CGACAGGTGA TTTGGGACTC CTGGCACCGC
AGCGTCAGTG CAGGGCTGGA CCCTAAAGAC GGGGAATACC GCTTTGTTAC TCCCGCTGAT
CTGGAGGCAA CCCTGGCAGC CAATCGAGTG TTGATTGCTG CAGCGGCAGA GGTCATGCGT
GGCTTACTGG CGTACAACCC CAGGGGCCAT ATCAATCTGA CCGATGCCGC AGGCACAACG
TTGTATTTTT GTGGGCTCGA CCTCACGCCT GTTGGCAGTC GCTTGCTGGA GTCCGTCCAA
GGCACCAACT GCACCGGCCT GGCGTTGGCC GAAGACAGAT TGTTGTATGT GCTAGCCGAG
GAAAACTTCG GCAACGACCT GCGTCGGCGG CGCATGCATT GCGCTGCAGC ACCGATCCGC
GATGCCCAAG GCCGGACGCT GGCCATGTTG ACCCTGACCG CCGAACCCGG CTGGTTTCAT
TTCCATACGT TGGGCACTGT GCAGGCTGCT GCCGAAGCGG TTTCGCGGCA TATGGCGTTG
CAGGCGTTGC TGGAAGAGCA GCAAACCGTG CTTGAAGTGC TCAACGAAGG GCTGGTGGTG
CTGGATGAGC GCGGCTGTAT CAAGGCTCTC AATCGTTATG CCCGACAATT GTTTCGCGTG
GGCCGCGACT TGTTGGGCAG CCCGTTCCAG CGTCTGGGCC GGAGCGAACT GACCGATGAG
ATTCTGCTGC GCGGCGGGGA CGGCCTGCGG GACCTGGATT GCACGTTTGA GCTGCATGAC
CGCAGTCACC TGGCATGCCT GGTCTCGGTG TGTTCACTGG GGCAGGGCGG GCGCATTGTT
TCGCTGCGCG AGAACCGCCG TATACGGGAA ATTACCCGGC GGATCGTCGG CTCCCAGGCC
AGCTACACCT TTGACACCAT TCAGGGCAGC TCCCGCGCTA TTCAGGATGC GTTGCACCTG
GGGCGCATAG CCAGTCGCAG TGATTCAACC ACATTGATTC TGGGCGAAAG CGGCACCGGC
AAGGAGTTAT TCGCCCAAGC CATCCATAAC GCCAGTGAAC GTTGCAACGG GCCATTCGTA
GCCGTCAACT GCGGGGCCAT TCCGCGAGAT CTGGTGCAGA GTGAATTGTT TGGTCATGTC
GAAGGCGCGT TCACCGGATC GGCGCGTGGC GGCTCGGCCG GCAAGTTTGA ATTGGCCGAT
GGCGGTACGA TCTTTCTCGA CGAAATCGGT GACATGTCTT TTGATGCCCA GGTCAGCCTT
TTGCGCGTCT TGCAAGAAGG CGAAGTGACA CGAGTGGGGG CAAAGCAATC CCGGCAAGTG
AATGTCCGCA TCATCGCGGC GACCCACCGT AACCTAAGCC AGGCGGTGGT GGATGGCGCG
TTTCGTGAGG ACCTTTACTA CCGGCTCAAT GTACTGAATT TGACGGTTCC ACCGCTGAGA
ATGCGCCGCG AAGATGTGCC GCTACTGGCA CAGCATTTTC TCGATCGTTG CGCACGTTCG
CTGCGTAAGT CGGTGCAGGG TATATCGCCG GAGGCGCTGG ATATTCTGTG TGCCTACCAC
TGGCCCGGCA ATGTTCGAGA ACTGGAAAAT ATCATCGAGC GGGCGACCAA CCTGGCCCTG
ACCGAGCGGC TCCAGACCAC AGATCTGCCG CTCGAAATCA AGCAAAGGCT GCGGCCTTTG
GTGCCAGGGC GCATGCCTGA ACTCCAGGCT GCACCAGACC TCGGAACGCA TGAAATGAAC
GCAATCATCA CCGCACTCAA GGCGACCCAC GGTAATATCC GGCTGGCCGC CAAACAGCTG
AACGTGTCCC GGGGCGGGCT GTATAACAAG ATGAATCGGT TTGGGTTAAG TGCTGATGAG
TTTCGCTCGG GACCAGAGTG TTGA
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| Protein sequence | MTPQPMAFSV QDLDYLTALD PTSLSEGPIA ALENAWLACL SGCTEQPVGV RQVIWDSWHR
SVSAGLDPKD GEYRFVTPAD LEATLAANRV LIAAAAEVMR GLLAYNPRGH INLTDAAGTT
LYFCGLDLTP VGSRLLESVQ GTNCTGLALA EDRLLYVLAE ENFGNDLRRR RMHCAAAPIR
DAQGRTLAML TLTAEPGWFH FHTLGTVQAA AEAVSRHMAL QALLEEQQTV LEVLNEGLVV
LDERGCIKAL NRYARQLFRV GRDLLGSPFQ RLGRSELTDE ILLRGGDGLR DLDCTFELHD
RSHLACLVSV CSLGQGGRIV SLRENRRIRE ITRRIVGSQA SYTFDTIQGS SRAIQDALHL
GRIASRSDST TLILGESGTG KELFAQAIHN ASERCNGPFV AVNCGAIPRD LVQSELFGHV
EGAFTGSARG GSAGKFELAD GGTIFLDEIG DMSFDAQVSL LRVLQEGEVT RVGAKQSRQV
NVRIIAATHR NLSQAVVDGA FREDLYYRLN VLNLTVPPLR MRREDVPLLA QHFLDRCARS
LRKSVQGISP EALDILCAYH WPGNVRELEN IIERATNLAL TERLQTTDLP LEIKQRLRPL
VPGRMPELQA APDLGTHEMN AIITALKATH GNIRLAAKQL NVSRGGLYNK MNRFGLSADE
FRSGPEC
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