Gene PSPTO_3040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3040 
Symbol 
ID1184697 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3420579 
End bp3421493 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content63% 
IMG OID637394401 
Producttranscriptional regulator, LysR family 
Protein accessionNP_792835 
Protein GI28870216 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.120446 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCGTA ACGACCTGCG TCGCGTCGAC CTCAATCTGC TCATCGTTTT CGAAACCCTG 
ATGCATGAGC GCAGCGTCAC GCGTGCGGCG GAAAAGCTGT TTCTTGGCCA GCCAGCCATC
AGCGCCGCGC TTTCTCGCCT GCGTGGGCTG TTCGACGATC CTTTGTTCGT GCGTACCGGC
CGCAGCATGG AGCCAACCGC CCGCGCCACA GAAATCTTCG CCCTGCTCTC CCCGGCGCTG
GACTCCATTT CGACTGCCGT CAGCCGGGCC TCAGAGTTCG ACCCGGCCAC CAGCACCTCG
GTATTCCGCA TCGGTTTGTC GGACGACGTC GAGTTCGCCC TGCTGCCCAC CCTGCTCAAG
CGCCTGCGCT CCGAAGCACC GGGGATCGTG CTGGTCGTCA GGCGGGTCAA CTACATCCTG
ATGCCACCAC TGCTGGCCTC GGGAGAGATT TCGGTCGGCG TCAGCTACAC CCAGGACCTG
CCCGCCAACG CCAAGCGCAA GGTATTGCGC AGAAGCAAGC CACAATTGTT GCGTGCCGAC
TCGATACCCG GCCCCCTCAG CCTAGACGAC TTCTGCGCCC GCCCCCACGC CCTGGTGTCA
TTTGCCGGCG ACCTGAGCGG GTTTATTGAC GAGCACCTGG AAAAACTCGA GCGCAAACGC
CACGTCGTCC TCGCCGTACC GCAGTTCAAC GGCTTGGCCA CGCTGCTGAC CGGCACCGAC
ATCATCGCCA CCGTGCCTGA TTACGCTGCG CAAGTGCTGA CGGCGGCGGG CGGCGTTCGG
TCTGAAGACC TGCCGATCGA GACGCGCACG TTTGAATTGC ACATGGCCTG GAGGGGGGCG
CAGGATAATG ATCCGGGGGA GCGGTGGTTG AGGTCGCGGA TTCAGATGTT TTTTGGCGAC
CCTGAGAGTC TTTAG
 
Protein sequence
MNRNDLRRVD LNLLIVFETL MHERSVTRAA EKLFLGQPAI SAALSRLRGL FDDPLFVRTG 
RSMEPTARAT EIFALLSPAL DSISTAVSRA SEFDPATSTS VFRIGLSDDV EFALLPTLLK
RLRSEAPGIV LVVRRVNYIL MPPLLASGEI SVGVSYTQDL PANAKRKVLR RSKPQLLRAD
SIPGPLSLDD FCARPHALVS FAGDLSGFID EHLEKLERKR HVVLAVPQFN GLATLLTGTD
IIATVPDYAA QVLTAAGGVR SEDLPIETRT FELHMAWRGA QDNDPGERWL RSRIQMFFGD
PESL