Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3040 |
Symbol | |
ID | 1184697 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3420579 |
End bp | 3421493 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637394401 |
Product | transcriptional regulator, LysR family |
Protein accession | NP_792835 |
Protein GI | 28870216 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.120446 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCGTA ACGACCTGCG TCGCGTCGAC CTCAATCTGC TCATCGTTTT CGAAACCCTG ATGCATGAGC GCAGCGTCAC GCGTGCGGCG GAAAAGCTGT TTCTTGGCCA GCCAGCCATC AGCGCCGCGC TTTCTCGCCT GCGTGGGCTG TTCGACGATC CTTTGTTCGT GCGTACCGGC CGCAGCATGG AGCCAACCGC CCGCGCCACA GAAATCTTCG CCCTGCTCTC CCCGGCGCTG GACTCCATTT CGACTGCCGT CAGCCGGGCC TCAGAGTTCG ACCCGGCCAC CAGCACCTCG GTATTCCGCA TCGGTTTGTC GGACGACGTC GAGTTCGCCC TGCTGCCCAC CCTGCTCAAG CGCCTGCGCT CCGAAGCACC GGGGATCGTG CTGGTCGTCA GGCGGGTCAA CTACATCCTG ATGCCACCAC TGCTGGCCTC GGGAGAGATT TCGGTCGGCG TCAGCTACAC CCAGGACCTG CCCGCCAACG CCAAGCGCAA GGTATTGCGC AGAAGCAAGC CACAATTGTT GCGTGCCGAC TCGATACCCG GCCCCCTCAG CCTAGACGAC TTCTGCGCCC GCCCCCACGC CCTGGTGTCA TTTGCCGGCG ACCTGAGCGG GTTTATTGAC GAGCACCTGG AAAAACTCGA GCGCAAACGC CACGTCGTCC TCGCCGTACC GCAGTTCAAC GGCTTGGCCA CGCTGCTGAC CGGCACCGAC ATCATCGCCA CCGTGCCTGA TTACGCTGCG CAAGTGCTGA CGGCGGCGGG CGGCGTTCGG TCTGAAGACC TGCCGATCGA GACGCGCACG TTTGAATTGC ACATGGCCTG GAGGGGGGCG CAGGATAATG ATCCGGGGGA GCGGTGGTTG AGGTCGCGGA TTCAGATGTT TTTTGGCGAC CCTGAGAGTC TTTAG
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Protein sequence | MNRNDLRRVD LNLLIVFETL MHERSVTRAA EKLFLGQPAI SAALSRLRGL FDDPLFVRTG RSMEPTARAT EIFALLSPAL DSISTAVSRA SEFDPATSTS VFRIGLSDDV EFALLPTLLK RLRSEAPGIV LVVRRVNYIL MPPLLASGEI SVGVSYTQDL PANAKRKVLR RSKPQLLRAD SIPGPLSLDD FCARPHALVS FAGDLSGFID EHLEKLERKR HVVLAVPQFN GLATLLTGTD IIATVPDYAA QVLTAAGGVR SEDLPIETRT FELHMAWRGA QDNDPGERWL RSRIQMFFGD PESL
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