| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3033 |
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| Symbol | |
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| ID | 1184690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3409902 |
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| End bp | 3411077 |
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| Gene Length | 1176 bp |
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| Protein Length | 391 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637394394 |
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| Product | twitching motility protein |
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| Protein accession | NP_792828 |
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| Protein GI | 28870209 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0402494 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATTATGG ATTTTCCGGC GTTGTTGAAG ATTCTGGCCA GTCAGGACGG ATCTGACCTT
TATCTTTCTA CCGGAGCACC GCCGTGTGCC AAGTTCAACG GCGTGCTCAA GCCGCTGAGC
AGCGAAACCC TCAAACCTGG CGAAGTGGCG GTGGTTGCCC AGGGGCTGAT GGACGAGGAG
CAGAAGCTCG AGTTTGTCCG GGAACTGGAG ATGAACCTCG CGGTGTCATT GGCGGGCATC
GGCCGGTTCC GGATCAATAT CTTCATGCAG CGCAACGAAG TGTCTATTGT CGCGCGTAAC
ATCAAGCTGG ACATTCCGCG CTTTGAGGAC CTTTTCCTGC CGCCGGTGTT GCTTGACGTG
ATCATGGAAA AACACGGTCT GGTGCTGTTT GTCGGCGCCA CCGGCTCGGG TAAATCGACC
TCGCTGGCGG CGCTGATTGA TTACCGTAAC CGCAATGCCA GCGGGCACAT CATCACCATT
GAGGACCCGG TCGAATTTAT CCATCGGCAC AAGAAATCCA TCGTCAATCA GCGTGAGGTC
GGCGTCGACA CCCGCAGCTT TCGCGCGGCA CTGAAAAACA CTCTGCGTCA GGCCCCGGAT
GTGATTCTGA TCGGCGAGAT CCGCGATCGC GAAACGATGG AGCACGCGCT GGCATTTGCC
GACACCGGCC ACTTGGCGAT TTCGACCCTG CACGCCAATA ACGCCAACCA GGCGCTGGAC
CGAATCATCA ACTTTTTCCC GGAAGAGCGG CGTGCGCAGC TGTTGCACGA CCTGGGCAAC
AACCTCAAGG CGTTCGTGTC TCAGCGGCTG GTAAAGACGC CTGATGGAAA ACGGCGCGCG
GCGGTGGAAG TGATGATGGG CACGCCGACC ATCCGCGACC TGATCCAGCG TAATGAGCTG
ACTGAACTCA AGGGCATCAT GGAAAAGTCC GGCAGCCTCG GGATGCAGAC GTTCGATACC
GCGCTGTTCA ACCTGGCCGT CGATGGCGCG ATCAGCGAGG AAGAAGCGTT GAAAAATGCC
GATTCGCAAA ACAACGTTCG TCTGCGCCTC AAGCTGCACA GCGAGAACGG AGTGGCTAAC
CTGACCACGC CGCCCCCGGC ACCGACCGGC AGCAGCACAG CCAGCACCGC CGAGTGGGGC
CTGGTCGACG ATGACGAGCC GGGGCCGCAG GCGTAA
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| Protein sequence | MIMDFPALLK ILASQDGSDL YLSTGAPPCA KFNGVLKPLS SETLKPGEVA VVAQGLMDEE
QKLEFVRELE MNLAVSLAGI GRFRINIFMQ RNEVSIVARN IKLDIPRFED LFLPPVLLDV
IMEKHGLVLF VGATGSGKST SLAALIDYRN RNASGHIITI EDPVEFIHRH KKSIVNQREV
GVDTRSFRAA LKNTLRQAPD VILIGEIRDR ETMEHALAFA DTGHLAISTL HANNANQALD
RIINFFPEER RAQLLHDLGN NLKAFVSQRL VKTPDGKRRA AVEVMMGTPT IRDLIQRNEL
TELKGIMEKS GSLGMQTFDT ALFNLAVDGA ISEEEALKNA DSQNNVRLRL KLHSENGVAN
LTTPPPAPTG SSTASTAEWG LVDDDEPGPQ A
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