Gene PSPTO_3029 details

Gene Information

• Locus tag: PSPTO_3029
• ID: 1184686
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 3404189
• End bp: 3406057
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637394390
• Product: peptide ABC transporter, periplasmic peptide-binding protein
• Protein accession: NP_792824
• Protein GI: 28870205
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG4166] ABC-type oligopeptide transport system, periplasmic component

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.778411
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTTTTG TCTGTTCATC ATTGCTCGCC TTGACGCTGA CCCTGGTCGG CACTGTTCAA 
ACCCTGTCTG CGGCACCGCA ACACGCATTG ACCGTTTATG GCGAGGCCCC GCGCTATCCC 
GCCGATTTCA GGCATTTCGA CTACGTGAAC CCCGACGCCC CCAAGGGTGG CAGCCTGCGT 
CGTTCGGCCA TTGAAATCGG CCAGTTTGAT CACCTGATGC CGTTTATCGA CAAGGGCATG 
GGTGTTTCAC AAATCAACGG CATGCTCTAT GCGCCGCTGG CCACACGCTC GATGGATGAG 
CCCTATACGG TTTACGGGCT GATCGCCGAG AAGATGGAGC GTGGCGCGGA CGGCCTTTCA 
CTGCGCTTTT ACCTGAACCC GAAGGCACGT TTCGCGGACG GCACACCCAT CACTGCCAAT 
GACGTGAAAT ACACCTACGA ACTGCTGATG ACCCAGGGCA ACCTGCAATA CCGCACCCAG 
TTTGAAGCGG TCAAAGGCCT GGAAGTCGAA TCGCCGACGC AGATCCGCTT CGATTTCAAA 
CACAGCGACA GCCGCACCCT GCCCCTTGAT CTCGCATCGC TGCCAGTATT CCCAGAACAC 
TGGTGGAAAA CCCGCGACTT TGCCAGCGGC GCGGGGTTTG AAATACCGCC GGGCAGCGGC 
CCTTACACCA TCAGCCATGT CGACCCGGGC CGCACCATCA CCTTCGAGCG CGACCCAAAC 
TGGTGGGGCA AAGACCTTCC GGTCAGCAAA GGCCTGTATA ACTTCGATAA ATTCAGCATT 
GAATATTTCG GCGACATCGA CGTGGCACGT ACGGTTCTCA AGGGCGGCGC CTACGACTAC 
AACCGCGAAT TTTCAGCGAC CGGTTATTCG ATCCGCTACG ACGGCCCCGC GCTCAGCGAC 
GGTCGCCTGC AAAAAGCACA ACTGGCTACC GGTGCGGTGC AAAGCTCGCA AGGCTTCATA 
TTCAACCTGA GCCGGCCGAT GTTTCAGGAC CGCCGCGTAC GCCAGGCGCT GTCGCTGCTC 
TGGGATTTCG AGTGGACCAA CCGGCAGATG ATGCGCAACA TGTACATTCG CCAGGACAGC 
TACTTTTCGA ACTCAGAGCT GGCCGCCAGC CAGCTGCCCA CTCCCGCCGA GCTGAAGATT 
CTTGAGCCAC TGCGTGGCAC AGTTCCCAAA GAGGTGTTCG ACACGGTGTT CAAAACGCCG 
AAGACCGACG GCACCGGCTT GATCCGCGAC AAGCAACTGC AAGCCCTGGC GCTGATGAAA 
GAAGCGGGCT GGACGCCGAA AGGTGATGAA TTGGTGAACG CGCAGGGCGA GCCATTCAGT 
TTCACGTTTC TCAATGCACA GAGCGGTTTC GAGCGGATGC TGCTGCCTTA CAAACGTACG 
CTGGCACAGA TCGGTATTCA TTTCGATATT CGCCGCATCG ACTCTGCGCA ATACCTGAAC 
CGTGTCATGG CCCGCGATTA CGACATGATT GTCACGGGCT ACCCGGTGTC CACCTCGCCC 
GGGGCCGAGT TGTACAACAG CTTTGGCTCG AAAGTGGCCA TGGACCCTGG CTCCAGCAAT 
TACATGGCGC TTCAGGACCC CGCCGTCGAC ACGCTGATTG CCGGGCTGGT CAAGGCCGAC 
AACAAGCAGA CCATGACCGA CTACGCACAC TGCCTGGACC GGGTGCTGCA ATGGAATTAC 
TACTGGATTC CCAACTATTA CCCGCCCGGT TCTTCGACAG TCTGGTGGAA CCGTTTCGGC 
ATCCCGAAAA TCCAGGCCAG CAATAACGAG GCGGTTGAAA CGTGGTGGGA AATAAGCCCG 
ACGCCGCTGA CCAACGAGCA GTTCGCCGAA CAGCGCGGCG CCTCGGCCAT TGTTTCGGAG 
ATGCGCTGA 

 

Protein sequence

MRFVCSSLLA LTLTLVGTVQ TLSAAPQHAL TVYGEAPRYP ADFRHFDYVN PDAPKGGSLR 
RSAIEIGQFD HLMPFIDKGM GVSQINGMLY APLATRSMDE PYTVYGLIAE KMERGADGLS 
LRFYLNPKAR FADGTPITAN DVKYTYELLM TQGNLQYRTQ FEAVKGLEVE SPTQIRFDFK 
HSDSRTLPLD LASLPVFPEH WWKTRDFASG AGFEIPPGSG PYTISHVDPG RTITFERDPN 
WWGKDLPVSK GLYNFDKFSI EYFGDIDVAR TVLKGGAYDY NREFSATGYS IRYDGPALSD 
GRLQKAQLAT GAVQSSQGFI FNLSRPMFQD RRVRQALSLL WDFEWTNRQM MRNMYIRQDS 
YFSNSELAAS QLPTPAELKI LEPLRGTVPK EVFDTVFKTP KTDGTGLIRD KQLQALALMK 
EAGWTPKGDE LVNAQGEPFS FTFLNAQSGF ERMLLPYKRT LAQIGIHFDI RRIDSAQYLN 
RVMARDYDMI VTGYPVSTSP GAELYNSFGS KVAMDPGSSN YMALQDPAVD TLIAGLVKAD 
NKQTMTDYAH CLDRVLQWNY YWIPNYYPPG SSTVWWNRFG IPKIQASNNE AVETWWEISP 
TPLTNEQFAE QRGASAIVSE MR