| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3028 |
|---|
| Symbol | ppiC-1 |
|---|
| ID | 1184685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3403680 |
|---|
| End bp | 3403961 |
|---|
| Gene Length | 282 bp |
|---|
| Protein Length | 93 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637394389 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase C |
|---|
| Protein accession | NP_792823 |
|---|
| Protein GI | 28870204 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0152676 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAAAG CAACTGCCCG CCACATCCTT GTTTCGAGCG AAGAGAAATG CGACGAACTC
AAGACTCAGA TCGAAGGCGG CGCTGATTTC GCTGAAGTCG CCAAGGCCAA TTCCAGCTGC
CCGTCCAGCC GTCAGGGCGG TGATCTGGGT TCGTTCGGTC CAGGCCAGAT GGTTAAGGAA
TTCGACACTG TCGTGTTCAG CGCGCCAGTC AACACCGTTC AGGGTCCGGT AAAGACTCAG
TTCGGCTATC ACCTGCTGGA AGTGACCAGC CGCCAGGATT GA
|
|---|
| Protein sequence | MPKATARHIL VSSEEKCDEL KTQIEGGADF AEVAKANSSC PSSRQGGDLG SFGPGQMVKE
FDTVVFSAPV NTVQGPVKTQ FGYHLLEVTS RQD
|
|---|
| |