Gene PSPTO_3023 details

Gene Information

• Locus tag: PSPTO_3023
• Symbol: uvrC
• ID: 1184680
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 3398488
• End bp: 3400311
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637394384
• Product: excinuclease ABC, C subunit
• Protein accession: NP_792818
• Protein GI: 28870199
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0322] Nuclease subunit of the excinuclease complex
• TIGRFAM ID: [TIGR00194] excinuclease ABC, C subunit

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.623507
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCAGA CATTCGATCC AAGTGCATTT CTCGCGACCT GTAGCGGTCG CCCTGGCGTT 
TATCGCATGT TCGATGCCGA CGCCACGCTG CTGTACGTCG GCAAGGCCAA GAACCTCAAG 
AAACGTCTTG CCAGCTACTT TCGCAAGACC GGGCACGCAC CCAAGACCGG CGCACTGGTT 
GCGCGCATCG CCCAGATTGA AACGACGATC ACCAACAACG AAACCGAAGC GCTGTTGCTG 
GAACAGACCC TCATCAAAGA GTGGCGGCCT CCGTACAACA TCCTGTTGCG TGATGATAAG 
TCCTACCCGT ATGTATTCCT GTCCGACGGT ACCTACCCAC GGCTGAGCAT TCATCGAGGT 
GCAAAGAAGG CCAAGGGTCG ATATTTCGGG CCGTATCCCA GCGCCGGTGC CATTCGTGAA 
AGCCTGAGCC TGCTGCAAAA GACCTTTCAG GTGCGCCAGT GCGAAGACAG CTTTTTCAAG 
AACCGCAACC GGCCTTGTCT GCAATATCAG ATCAAACGCT GCAAGGGGCC GTGCGTCGGT 
CTTGTGGAGC CTGAGGTGTA CGCCGAAGAC GTGCGTCACT CGGTGATGTT TCTCGAAGGG 
CGCAGTAATG CATTGAGCGA TGAGCTGAAC GCCTCGATGG AAAAAGCCGC GATGGCGCTG 
GATTTCGAGC GCGCGGCCGA GTTGCGTGAT CAGGTGGCGC TGCTGCGGCG CGTTCAGGAC 
CAGCAAAGCA TGGACGGCGG CACAGGCGAT GTGGACGTGG TTGCCGCGTT CGTCAATCCG 
GGCGGCGCTT GTGTGCACCT GATCAGCGTG CGGGGCGGCC GGGTGCTGGG CAGCAAGAAC 
TTCTTCCCGC AGGTCGGTAT AGAAGAGGAG GTCGGTGAAG TGATGTCGGC CTTCCTGGCG 
CAGTATTTTT TGGGCGGTGT TGACCGCGAG TTGCCCAGTG AAGTCATCGT CAACGTCGTC 
AACGAAGACT TCCCGGCACT GATCGATGCC ATCGAAGAAT CGCGTGGCCG GGAAATGACC 
ATCAGCCACC GGGTGCGCGG CACTCGGGCG CGCTGGCAGC AACTGGCGGT CACCAATGCC 
GAGCAGGCGC TGGCAGCGCG GCTGGCCAAC CGTCAGCACG TCGCGTCGCG ATTTGAAGCG 
TTGGCAGTTG TCCTCAATCT CGACGAGCCG CCGATGCGTC TCGAATGCTA TGACATCAGT 
CACTCCAGTG GTGAGGCGAC CGTGGCGTCG TGTGTCGTGT TCGGGCCTGA GGGTCCGATC 
AAGTCCGATT ATCGCCGCTT CAACATCGAA GGCGTGACCG CCGGTGACGA CTACGCCGCC 
ATGCACCAGG CCCTGACCCG GCGCTACAGT CGCATCAAGG CCGGGGAGGG CAAGCTGCCC 
GATGTGCTGC TGGTGGACGG CGGCAAGGGG CAAATGTCCA TGGCTCGCGA TGTGCTCAAC 
GAATTGCAGG TGCCGGACCT GATCCTGCTC GGCGTTGCCA AGGGCACCAC GCGCAAGGCC 
GGTTTCGAGA CGCTGTACCT CAATGACGCC GCTCATGAGT TCACGCTGCC TGGTGACTCA 
CCGGCGCTGC ACCTTATTCA GCAGATACGC GATGAGGCGC ACCGCTTCGC AATTACCGGC 
CACCGCGCGC GCCGTGGCAA GACCCGACGC ACATCGACGC TCGAAGGTAT TGCAGGCGTC 
GGGCCGACCC GGCGGCGTGA TCTGCTCAAA CATTTCGGTG GATTACAGGA GTTGTCCCGT 
GCCAGCATCG ATGAAATAGC AAAAGCACCC GGAATCAGTA AAAAGCTGGC AGAGTCGATT 
TATGCAAACC TGCACAGCGA GTAG 

 

Protein sequence

MTQTFDPSAF LATCSGRPGV YRMFDADATL LYVGKAKNLK KRLASYFRKT GHAPKTGALV 
ARIAQIETTI TNNETEALLL EQTLIKEWRP PYNILLRDDK SYPYVFLSDG TYPRLSIHRG 
AKKAKGRYFG PYPSAGAIRE SLSLLQKTFQ VRQCEDSFFK NRNRPCLQYQ IKRCKGPCVG 
LVEPEVYAED VRHSVMFLEG RSNALSDELN ASMEKAAMAL DFERAAELRD QVALLRRVQD 
QQSMDGGTGD VDVVAAFVNP GGACVHLISV RGGRVLGSKN FFPQVGIEEE VGEVMSAFLA 
QYFLGGVDRE LPSEVIVNVV NEDFPALIDA IEESRGREMT ISHRVRGTRA RWQQLAVTNA 
EQALAARLAN RQHVASRFEA LAVVLNLDEP PMRLECYDIS HSSGEATVAS CVVFGPEGPI 
KSDYRRFNIE GVTAGDDYAA MHQALTRRYS RIKAGEGKLP DVLLVDGGKG QMSMARDVLN 
ELQVPDLILL GVAKGTTRKA GFETLYLNDA AHEFTLPGDS PALHLIQQIR DEAHRFAITG 
HRARRGKTRR TSTLEGIAGV GPTRRRDLLK HFGGLQELSR ASIDEIAKAP GISKKLAESI 
YANLHSE