| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3017 |
|---|
| Symbol | |
|---|
| ID | 1184673 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3391855 |
|---|
| End bp | 3392907 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637394377 |
|---|
| Product | transcriptional regulator, LacI family |
|---|
| Protein accession | NP_792812 |
|---|
| Protein GI | 28870193 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0238556 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAA AGCCTCGTCA AAAACTGCGT CCCACCATGG CGGATGTCGC GCGCGAGGCG
GGCGTCAGCC TCTCCACCGT CGACCGTGTG CTGAATCTGC GTGCGGACGT GCGTACCGAC
ACAGCACAGC GTATTGCCGC CGCGGCGGCA CTCTTGGGCT TCCATGCCAA AGGGGTGATT
GAGCAGCGGA TACTCAACGA TAAACCGACT GTGCGGCTGG GTTTTCTGCT GCAGAAAAGC
GGCGTGGCTT TCTATAAAGG TCTCGCACAA GCGCTGTCGA ACGCGGCAGC GACTTTCACG
CGGGCGCGTG TCCAGGTCGT CATCGGTTAC CTGGATGACC TTGATCCGGC GACGGTGGCC
CAGCGTCTGT TGGCGCTGGG GGATCAGGTC GATGGTGTCG GTATGGTTGC GGTCGATCAT
CCGCGTGTGC GTGATGCCGT CGCCAGCCTG CAAGTTGCTG GCGTTCCTGT GGTCGCCTTG
ATTTCTGAGC TGGCAGGCCT TGGCTCTGCC TCTTACGTCG GTGTCGACAA TCGGCTGATG
GGACGCACGG CGGGGTGGTT TGTCACGCGC CTGGCAGGGT CCCCAGGCTC GGCCGCGGTG
ATGGTCAGCA GCCAGCGCTT CCAGTGTCAG GAGCTGTGTG AGATGAGCTT TCGCAGTTAC
CTGTCGAGCC ACTCAACGGA TTGGGAGTTA CTGGCATCAC GCCTGACGCT TGAAGACGAC
GATTTCGCCT ATGGTAATGC GCTGGACTTA CTGAGCGGTG AGCCAGAGCT TTCGGCGTTG
TACGTGGCGG GAGGCGGAGT CGCCGGGGTA TTACGTGCAC TGCGCGAGCT CCAACAGCAG
CAGATCAGGC TACCTGTGGT GGTGTGTCAT GATTTGACGC CTCTGACCCG CGAAGCATTG
AAAGCTGACC TGGTACAGGT CGTGCTTTCT CACCCGATTG TGCAGGTGGC GGAGCAGACG
GTGAGGGCGC TGGTCGCAGC GTCTTCGGAT TTGACCCGGG TCGCCAGAGT GACAGTGCCC
ATACAGGTCG ACGTCAGTGA AAGCATCGCT TGA
|
|---|
| Protein sequence | MSKKPRQKLR PTMADVAREA GVSLSTVDRV LNLRADVRTD TAQRIAAAAA LLGFHAKGVI
EQRILNDKPT VRLGFLLQKS GVAFYKGLAQ ALSNAAATFT RARVQVVIGY LDDLDPATVA
QRLLALGDQV DGVGMVAVDH PRVRDAVASL QVAGVPVVAL ISELAGLGSA SYVGVDNRLM
GRTAGWFVTR LAGSPGSAAV MVSSQRFQCQ ELCEMSFRSY LSSHSTDWEL LASRLTLEDD
DFAYGNALDL LSGEPELSAL YVAGGGVAGV LRALRELQQQ QIRLPVVVCH DLTPLTREAL
KADLVQVVLS HPIVQVAEQT VRALVAASSD LTRVARVTVP IQVDVSESIA
|
|---|
| |