Gene PSPTO_3013 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3013 
Symbol 
ID1184669 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3389035 
End bp3390057 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content59% 
IMG OID637394374 
ProductISPsy4, transposase 
Protein accessionNP_792809 
Protein GI28870190 
COG category[L] Replication, recombination and repair 
COG ID[COG4584] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0378398 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGACCC AGGAGCAGTC TGTGGAAATT AAAGTGTTGG CCCGTCAGGG CCATGGCATC 
AAATTCATCG CCCGTGAGCT GGGTATTTCG CGTAACACCG TGCGCAAGTA CCTGCGAAAG
GCCCGGTCGC TACCCAGTGA CAAGGTGAGA CCCGCACGTC CGTGCAAAAT CGACCCCTTC
AAGGACTACC TGCACGAGCG TATTGAGGCG GCGCGCCCAC ACTGGATTCC GGCGACCGTC
CTGCTGCGTG AGATCACGGC ATTGGGGTAC AGCGGCGGCG TCAGTCGTCT GAAGGCTTAT
ATTCGCCCCT TCAAACGTAA GGCAGAAGAG CCGGTGGTAC GTTTCGAGAC ACTGCCCGGC
AAGCAGATAC AGGTGGACTT CACCACCATT CGACGAGGCC GTCAGCCGCT TAAGGCGTTC
GTGGCGACAC TTGGTTTTAG TCGAGCAAGC TTTGTCCGTT TCTCCGAGCG AGAGGACAGC
GAAGCCTGGC TGACAGGGCT TCGGGAGGCG TTCGCTTACT TTGGCGGCGT GCCCGAGCAG
GCATTGTTTG ATAACGCCGG AACCATCATC ACCGAGCGAG ATGCTTTTGG GGAGGGCCAG
CACCGTTGGC ATCCCCGATT GGCTGCGCTG GCCGATGAGT TTGGTTTTAT TCCCAAGGTC
TGCCGCCCTT ACCGTGCCCA GACCAAGGGC AAGGTTGAGC GCTTCAACGG GTATCTGAAG
GGCAGTTTCA TTACCCCGTT GGCCGCTACG CTCAAGAGTG CGGGTCTGAC GCTGGATGTG
GTGACGGCCA ACGCACATAT CGGCCAATGG CTCGACGAAG TCGCTCATCA GCGGATTCAC
GGCACGACGG GTGTTCAACC GGCGGTACGT CTGGCCCAAG AGCAGCAGGT ACTATTACCA
CTGCCAACAC AGAGCCTGCG CCCACAACCC GCCCAAGGCC TACGCCTGGG ACGGGTCCTG
CCGTACGAGA GCTTGCAGCA TCCGCTGTCG GTTTATGAGC AACTGCTGGA GGTGAGAGCA
TGA
 
Protein sequence
MLTQEQSVEI KVLARQGHGI KFIARELGIS RNTVRKYLRK ARSLPSDKVR PARPCKIDPF 
KDYLHERIEA ARPHWIPATV LLREITALGY SGGVSRLKAY IRPFKRKAEE PVVRFETLPG
KQIQVDFTTI RRGRQPLKAF VATLGFSRAS FVRFSEREDS EAWLTGLREA FAYFGGVPEQ
ALFDNAGTII TERDAFGEGQ HRWHPRLAAL ADEFGFIPKV CRPYRAQTKG KVERFNGYLK
GSFITPLAAT LKSAGLTLDV VTANAHIGQW LDEVAHQRIH GTTGVQPAVR LAQEQQVLLP
LPTQSLRPQP AQGLRLGRVL PYESLQHPLS VYEQLLEVRA