Gene PSPTO_3010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3010 
Symbol 
ID1184666 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp3384399 
End bp3385373 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content62% 
IMG OID637394372 
Productamino acid ABC transporter, permease protein 
Protein accessionNP_792807 
Protein GI28870188 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0765] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.234602 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCATTG TCGCCAAACC CTATGCCTTC ATCGATCAGC CCAGCCGTTA TCCGCTGCGC 
CAGAGCCGAG TATCACCGGC ACCGATCAAG GCGTTGCAGG TCGTGCCGGC CCGCCACCCC 
GGTCGCTGGG CCGGGTCGAT ATTCGCAGCA CTAGTGCTGG TGGCCATCGT GCACTCGCTG 
GCCACCAATC CGCGCTGGGA ATGGGACGTC TTCGGTCAGT GGTTCTTCTC GCCATCGGTA 
CTGCGCGGCC TGTCCCAGAC ACTGCTGCTG ACGCTGCTGA GCACGGTGTT CAGCATTGTT 
CTCGGCACGG CGCTGGCCTT GGCTCGCCTG TCGCGCTCAC CGCTGCTGGC GGCTCTGGCC 
TGGGGCTACA TCTGGTTTTT CCGCTCGATG CCAGCGTTGC TGGTGCTGAT CATTCTTTAC 
AACTTCGCCT ATCTTTACGA CCACATTGTG CTGGCAGTGC CGTTCACCGA TCTGGTCTTT 
GCCCAGTGGT CGACGGTGGA TGTGCTCAGT CAATTCACTG TGGCGGTGCT GGGTTTGAGC 
CTGATGCAGG CGGCGTATAC GGCGGAAATC ATTCGCGGCG GCCTGATCGG TGTCGACGCC 
GGCCAGCATG AGGCCGCCGC AGCGCTGGGG CTGCCTGCTT CGCGTCGGGT TTTTCGCATC 
ATCCTGCCCC AGGCGTTGCG CTCGATTCTG CCGTCCGGGT TCAACGAAAT CATTGGCCTG 
GTCAAGGGCA CTTCCATTGT TTACGTGCTG GCCTTGCCAG AGCTGTTCTA CACCGTGCAG 
GTCATCTACA ACCGCACCCA GGCGGTGATC CCGCTGCTGA TTGTCGCCAC GGTCTGGTAC 
CTGATCATTA CCACGGTGCT GACCAGCGCC CAGTATTACG TCGAGCGGCA CTTTGCCCGT 
GGCACGGCGC GGGTTCTGCC GCCCACGCCC TTGCAGCGGC TGCGCGGCTG GTTCAAGGAG 
AAGCATCATG AGTGA
 
Protein sequence
MPIVAKPYAF IDQPSRYPLR QSRVSPAPIK ALQVVPARHP GRWAGSIFAA LVLVAIVHSL 
ATNPRWEWDV FGQWFFSPSV LRGLSQTLLL TLLSTVFSIV LGTALALARL SRSPLLAALA 
WGYIWFFRSM PALLVLIILY NFAYLYDHIV LAVPFTDLVF AQWSTVDVLS QFTVAVLGLS 
LMQAAYTAEI IRGGLIGVDA GQHEAAAALG LPASRRVFRI ILPQALRSIL PSGFNEIIGL 
VKGTSIVYVL ALPELFYTVQ VIYNRTQAVI PLLIVATVWY LIITTVLTSA QYYVERHFAR 
GTARVLPPTP LQRLRGWFKE KHHE