| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3003 |
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| Symbol | xylF |
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| ID | 1184659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3376725 |
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| End bp | 3377726 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637394365 |
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| Product | D-xylose ABC transporter, periplasmic-D xylose binding protein |
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| Protein accession | NP_792800 |
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| Protein GI | 28870181 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02634] D-xylose ABC transporter, substrate-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0589453 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACCC TGAAACGCAC GCTGCTTGCC AGTGCCTTGG CACTGCTGTC CCTGCCGGTC
ATGGCCGACG CCGCCCACCC GAAAATCGGC TTTTCCATCG ACGACCTGCG CCTGGAGCGC
TGGTCACGAG ACCGTGATTA CTTCGTGGCG GCGGCAGAAA AACTGGATGC CAAGGTCTTC
GTACAGTCCG CCGATGCCAA CGAGCAGAAG CAGATTTCGC AGATTGAAAA CCTCATCTCT
CGCGGCGTCG ACGTGATTGT CATCGTGCCG TTCAACGCCA CCGTGCTGAC CAACGCCATC
GCCGAAGCCA AGAAGGCCGG GATCAAGGTC GTTTCGTATG ACCGTCTGAT CCTCAATGCC
GACATCGACG CTTACATTTC CTTCGATAAC GAAAAGGTCG GCGAGATGCA GGCCAGCGGC
GTGCTGCAAG CGGCACCCAA GGGCAATTAC TTTTTGCTCG GCGGCGCGCC CACCGACAAT
AACGCCAAAA TTCTGCGCGA AGGCCAGATG AAAGTGCTGC AACCGGCCAT CGACAAGGGC
GATATCAAGA TTGTCGGGCA ACAGTGGGTC AAGGAGTGGA ACCCCACCGA AGCACTGAGC
ATTGTGGAGA ACGCCCTGAC CCGCAATGAC AACAAGATCG ATGGCATCGT CGCCTCCAAC
GACGCGACGG CCGGGGGCGC CATTCAGGCG CTGGCCGCGC AGAAACTGGC CGGCAAGGTG
CCGATTTCGG GTCAGGACGC CGACCTGGCG GCGGTCAAGC GGGTCATCGA TGGCACCCAG
ACCATGACCG TTTACAAGCC GCTGAAACTG ATCGCCACCG AAGCCGCCAG ACTGTCGGTG
CAACTGGTAC GTAACGAGAA ACCTGCCTTT ACCTCGCAGT ACGACAATGG CAGCAAGAAA
GTCGACACTA TCTTGCTGAC CCCGACACCG TTGACCAAAG ACAACATCGA CCTGCTGGAG
AAAGACGGGT TCTACACCAA GGCGCAGATG GGCGGCCAGT GA
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| Protein sequence | MNTLKRTLLA SALALLSLPV MADAAHPKIG FSIDDLRLER WSRDRDYFVA AAEKLDAKVF
VQSADANEQK QISQIENLIS RGVDVIVIVP FNATVLTNAI AEAKKAGIKV VSYDRLILNA
DIDAYISFDN EKVGEMQASG VLQAAPKGNY FLLGGAPTDN NAKILREGQM KVLQPAIDKG
DIKIVGQQWV KEWNPTEALS IVENALTRND NKIDGIVASN DATAGGAIQA LAAQKLAGKV
PISGQDADLA AVKRVIDGTQ TMTVYKPLKL IATEAARLSV QLVRNEKPAF TSQYDNGSKK
VDTILLTPTP LTKDNIDLLE KDGFYTKAQM GGQ
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