| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2951 |
|---|
| Symbol | |
|---|
| ID | 1184605 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3316244 |
|---|
| End bp | 3317929 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637394311 |
|---|
| Product | sigma-54 dependent transcriptional regulator |
|---|
| Protein accession | NP_792748 |
|---|
| Protein GI | 28870129 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.201799 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGGTCAC CGACTGCCGA GGAGTTGACC GGTTGTTTGT TCTTCTCGCC CGACGATGGC
CGCATCTGGC TCAATGACCA GCGCATGTTG CTGCTGCATA GCTCATCGTT CGGCACCCTG
CGCCGGGAAA TCATCGAGCG GCTGGGGCAG GAGCCGGCGC GTGGGATGTT TACTCGCGCA
GGCTACCTTT CCGGCGCACG TGACGCCCGG CTGATCCGTG AGCGCTGGCC ACTCGCCGAC
GCCACGTCGG CGTTTCGCGC CGGCACCCAC CTGCACACGC TGGAAGGCAT GGCCAAGGTC
GAATCGCTGC ATTTCAAGTT CGACGCAGAG TCCGGCTTTT ATGAAGGCGA GTTCCTCTGG
CACAACTCCT GCGAAGCTGA CGAGCATCTT GCAGCGTGTG GCACCGGGCA GGACCCGGTG
TGCTGGACCG AAATCGGCTA TGCAATCGGC TTTGTCAGCG GCCTGTTCGG GCAAATGGTG
ATTTTTCGCG AGGTGGAATG CCGTGGCATG GGGCACGCAA GCTGCCGGGT CATCGGCAAG
ACCGCCGAGC AATGGGGTGA CGTCGAGCGT GACCTCAGTT ACCTGAGCGT GGCCAAGACC
GTCGCGCCGG CTCATACGCC TGCATTGGCC AACGCCCACT ATGACGCCGG CCCGCCGACG
GGCACCGACC AGCCACTGAT TGGCGCCAGC GCAGCGTTCA ACGCGGCCAC TCAGGCCTTG
CAGCGCGTGG CGATGACCCC GGCAACCGTG CTGATCAGCG GCGAGTCCGG CGTCGGCAAA
GAGATGTTCG CCCGCCAACT GCATCAGCTC AGCCGCAACC GGGAAGGCCC GTTCGTGGCC
CTCAACTGCG CAGCCATTCC CGACAATCTG ATCGAGGCAG AGCTGTTTGG CGTAGAGCGC
GGGGCTTACA CGGGAGCCAC GCACTCAAGA CCCGGACGTT TCGAGCGCGC CAATGGCGGC
ACGCTGTTTC TGGATGAAAT CACCTCGCTG AGCCTGGCCG GCCAAAGCAA ACTGCTGCGC
GCCCTGCAGG AACGGGAAAT AGAGCGCGTC GGTGGCGGCC ACGGCATCAA AGTCAACGTG
CGCGTGGTGG CGGCGACCAA CGTTGATCTG CGCAAGGCCG TGGCCGAGGG TGATTTTCGC
GAAGACCTGT TTTATCGCCT GAACGTCTAC CCCATCGCCC TGCCCCCGCT GCGCGAGCGT
CGCGATGACA TTCCGCTGCT GATCAATGCC TTTCTCCAGC GCTTCTGCCA CGAATACGGC
CGCACGCCAG CAGGCTTGAC CATGCGCGCC TTGAAAACAC TGCTGCGCTA CGACTTCGCC
GGCAATGTGC GCGAACTGCA GAACCTCATC GAGCGCGGCC TGATTGCCAG CGATGAAGGC
CAGGCCATTG ATCTGGTGCA TATCTTTCGT AACGAATCAC TGCCGGTGGA TTCGTACTCG
CTGAACCACG ACGGCGCACT GTCGAAGGCC GCTCCACCCA TTGCACACAC GGCACAGGGC
GCCGCCTTGC TGGATACGCT GAGTCAGGAA AAACAGGCTT TTTCGATTGA AGAGCTTGAG
CAGCAGTTGA TTCGCGAGGC ACTGGAAAAA AGTGCAGGCA ACCTGGCGGC GGCTTCGCGT
TTGCTGGGGT TGAGCCGTGC CCAGTTTGCC TATCGTTTGA AGAAGCAGCA GCCCGACGCG
GTATGA
|
|---|
| Protein sequence | MGSPTAEELT GCLFFSPDDG RIWLNDQRML LLHSSSFGTL RREIIERLGQ EPARGMFTRA
GYLSGARDAR LIRERWPLAD ATSAFRAGTH LHTLEGMAKV ESLHFKFDAE SGFYEGEFLW
HNSCEADEHL AACGTGQDPV CWTEIGYAIG FVSGLFGQMV IFREVECRGM GHASCRVIGK
TAEQWGDVER DLSYLSVAKT VAPAHTPALA NAHYDAGPPT GTDQPLIGAS AAFNAATQAL
QRVAMTPATV LISGESGVGK EMFARQLHQL SRNREGPFVA LNCAAIPDNL IEAELFGVER
GAYTGATHSR PGRFERANGG TLFLDEITSL SLAGQSKLLR ALQEREIERV GGGHGIKVNV
RVVAATNVDL RKAVAEGDFR EDLFYRLNVY PIALPPLRER RDDIPLLINA FLQRFCHEYG
RTPAGLTMRA LKTLLRYDFA GNVRELQNLI ERGLIASDEG QAIDLVHIFR NESLPVDSYS
LNHDGALSKA APPIAHTAQG AALLDTLSQE KQAFSIEELE QQLIREALEK SAGNLAAASR
LLGLSRAQFA YRLKKQQPDA V
|
|---|
| |