Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2951 |
Symbol | |
ID | 1184605 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3316244 |
End bp | 3317929 |
Gene Length | 1686 bp |
Protein Length | 561 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637394311 |
Product | sigma-54 dependent transcriptional regulator |
Protein accession | NP_792748 |
Protein GI | 28870129 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.201799 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGGGTCAC CGACTGCCGA GGAGTTGACC GGTTGTTTGT TCTTCTCGCC CGACGATGGC CGCATCTGGC TCAATGACCA GCGCATGTTG CTGCTGCATA GCTCATCGTT CGGCACCCTG CGCCGGGAAA TCATCGAGCG GCTGGGGCAG GAGCCGGCGC GTGGGATGTT TACTCGCGCA GGCTACCTTT CCGGCGCACG TGACGCCCGG CTGATCCGTG AGCGCTGGCC ACTCGCCGAC GCCACGTCGG CGTTTCGCGC CGGCACCCAC CTGCACACGC TGGAAGGCAT GGCCAAGGTC GAATCGCTGC ATTTCAAGTT CGACGCAGAG TCCGGCTTTT ATGAAGGCGA GTTCCTCTGG CACAACTCCT GCGAAGCTGA CGAGCATCTT GCAGCGTGTG GCACCGGGCA GGACCCGGTG TGCTGGACCG AAATCGGCTA TGCAATCGGC TTTGTCAGCG GCCTGTTCGG GCAAATGGTG ATTTTTCGCG AGGTGGAATG CCGTGGCATG GGGCACGCAA GCTGCCGGGT CATCGGCAAG ACCGCCGAGC AATGGGGTGA CGTCGAGCGT GACCTCAGTT ACCTGAGCGT GGCCAAGACC GTCGCGCCGG CTCATACGCC TGCATTGGCC AACGCCCACT ATGACGCCGG CCCGCCGACG GGCACCGACC AGCCACTGAT TGGCGCCAGC GCAGCGTTCA ACGCGGCCAC TCAGGCCTTG CAGCGCGTGG CGATGACCCC GGCAACCGTG CTGATCAGCG GCGAGTCCGG CGTCGGCAAA GAGATGTTCG CCCGCCAACT GCATCAGCTC AGCCGCAACC GGGAAGGCCC GTTCGTGGCC CTCAACTGCG CAGCCATTCC CGACAATCTG ATCGAGGCAG AGCTGTTTGG CGTAGAGCGC GGGGCTTACA CGGGAGCCAC GCACTCAAGA CCCGGACGTT TCGAGCGCGC CAATGGCGGC ACGCTGTTTC TGGATGAAAT CACCTCGCTG AGCCTGGCCG GCCAAAGCAA ACTGCTGCGC GCCCTGCAGG AACGGGAAAT AGAGCGCGTC GGTGGCGGCC ACGGCATCAA AGTCAACGTG CGCGTGGTGG CGGCGACCAA CGTTGATCTG CGCAAGGCCG TGGCCGAGGG TGATTTTCGC GAAGACCTGT TTTATCGCCT GAACGTCTAC CCCATCGCCC TGCCCCCGCT GCGCGAGCGT CGCGATGACA TTCCGCTGCT GATCAATGCC TTTCTCCAGC GCTTCTGCCA CGAATACGGC CGCACGCCAG CAGGCTTGAC CATGCGCGCC TTGAAAACAC TGCTGCGCTA CGACTTCGCC GGCAATGTGC GCGAACTGCA GAACCTCATC GAGCGCGGCC TGATTGCCAG CGATGAAGGC CAGGCCATTG ATCTGGTGCA TATCTTTCGT AACGAATCAC TGCCGGTGGA TTCGTACTCG CTGAACCACG ACGGCGCACT GTCGAAGGCC GCTCCACCCA TTGCACACAC GGCACAGGGC GCCGCCTTGC TGGATACGCT GAGTCAGGAA AAACAGGCTT TTTCGATTGA AGAGCTTGAG CAGCAGTTGA TTCGCGAGGC ACTGGAAAAA AGTGCAGGCA ACCTGGCGGC GGCTTCGCGT TTGCTGGGGT TGAGCCGTGC CCAGTTTGCC TATCGTTTGA AGAAGCAGCA GCCCGACGCG GTATGA
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Protein sequence | MGSPTAEELT GCLFFSPDDG RIWLNDQRML LLHSSSFGTL RREIIERLGQ EPARGMFTRA GYLSGARDAR LIRERWPLAD ATSAFRAGTH LHTLEGMAKV ESLHFKFDAE SGFYEGEFLW HNSCEADEHL AACGTGQDPV CWTEIGYAIG FVSGLFGQMV IFREVECRGM GHASCRVIGK TAEQWGDVER DLSYLSVAKT VAPAHTPALA NAHYDAGPPT GTDQPLIGAS AAFNAATQAL QRVAMTPATV LISGESGVGK EMFARQLHQL SRNREGPFVA LNCAAIPDNL IEAELFGVER GAYTGATHSR PGRFERANGG TLFLDEITSL SLAGQSKLLR ALQEREIERV GGGHGIKVNV RVVAATNVDL RKAVAEGDFR EDLFYRLNVY PIALPPLRER RDDIPLLINA FLQRFCHEYG RTPAGLTMRA LKTLLRYDFA GNVRELQNLI ERGLIASDEG QAIDLVHIFR NESLPVDSYS LNHDGALSKA APPIAHTAQG AALLDTLSQE KQAFSIEELE QQLIREALEK SAGNLAAASR LLGLSRAQFA YRLKKQQPDA V
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