Gene PSPTO_2911 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2911 
Symbol 
ID1184565 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3276096 
End bp3277370 
Gene Length1275 bp 
Protein Length424 aa 
Translation table11 
GC content61% 
IMG OID637394272 
Productmandelate racemase/muconate lactonizing enzyme family protein 
Protein accessionNP_792709 
Protein GI28870090 
COG category[M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only 
COG ID[COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.609631 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAAATCA TCCGTGTGAC CGTGACCCCC ATCGCCTTTC GCGACCCGCC GCTGCTCAAC 
GCCAGCGGTA TCCATGAACC CTTTGCCTTG CGCTCGATCA TCGAGATAGA GAGCGACAAC
GGTTATATCG GCCTCGGCGA AAGTTACGGC GACGCGCCAG CACTGGCGAT TCAGCAGCAG
GTACAGAACC AGTTGATCGG CATCGACCCG TTCAACCTCA ATCAATTGCG CAGCATCGTT
CAGGCCACCG TTGCGGCACA CAAGCCCGCC AGCCTGGCCG GTGCCGAACT CGCGCCGGGC
TCGCATGCCA GCAAGGCGGT GAGCAATGCC TATTCGGCAT TCGAGGTGGC GTTTCTGGAC
CTGCAGGCAC GCTCCATGAA CCTGCCACTG GTGGACCTGC TGGGTGGTGC GATTCGCGAG
CGTATTCCGT TCAGCGCCTA CCTGTTCTTC AAGTACGCGC AGCACATCGA CACGCCCTAC
CCACCAGACA ACTGGGGCGA GGCGCTGAAC GAAGAACAGA TCGTCGCCCA GGCCCGACGC
ATGATCGAGG CCTATGGCTT CAAAAGCATC AAGCTCAAGG CCGGCGCGCT GGACCCTGAA
CACGAAGTGT CGTGCATCAA GGCCTTGAAA AAGGCATTCC CCGGCTACCC GCTACGCATC
GACCCCAACG GCAACTGGTC GCTGGAAACC TCGATTCGCA TGGCGCAGCT GCTCGGCGAT
GACTTGCAGT ACTACGAAGA CCCTACGCCG GGCCTGGACG GCATGTCCGA ACTGCACAAA
CGCACCGGGC TACCGCTGGC GACCAACATG GTGGTCACCG ACTTCGACGA ATTTCGCCGC
AGCGTGGCCC TGAACAGCGT GCAGATCGTG CTCGCCGACC ACCATTACTG GGGCGGCCTG
CGCGACACCC AGGCGCTGGC GAAGATGTGC GACACCTTTG GCCTTGGCGT GTCGATGCAT
TCCAATTCCC ACTTGGGCAT CAGCCTCATG GCCATGGCGC ATGTGGCCGC CTCGGTACCC
AATCTGGATT ACGCCTGCGA CACACATTAC CCGTGGCAGG AAGCGGACGA AGAAGTCATC
AAGGGCGGCA AACTGCCGAT TGTCGACGGC TGCGTCAGCA TCACCCGCGC GCCTGGCCTG
GGCCTCGAAC TGGATTACGA CCAGCTCGGC AAGCTCAACG ACCAGTACCA CAGCTGCGGC
ATTCGTCAGC GCGATGATGT GAGGCAGATG CAGAAGTACA CACCGGACTG GAAGGCCGTC
AAACCGCAGT ATTAG
 
Protein sequence
MKIIRVTVTP IAFRDPPLLN ASGIHEPFAL RSIIEIESDN GYIGLGESYG DAPALAIQQQ 
VQNQLIGIDP FNLNQLRSIV QATVAAHKPA SLAGAELAPG SHASKAVSNA YSAFEVAFLD
LQARSMNLPL VDLLGGAIRE RIPFSAYLFF KYAQHIDTPY PPDNWGEALN EEQIVAQARR
MIEAYGFKSI KLKAGALDPE HEVSCIKALK KAFPGYPLRI DPNGNWSLET SIRMAQLLGD
DLQYYEDPTP GLDGMSELHK RTGLPLATNM VVTDFDEFRR SVALNSVQIV LADHHYWGGL
RDTQALAKMC DTFGLGVSMH SNSHLGISLM AMAHVAASVP NLDYACDTHY PWQEADEEVI
KGGKLPIVDG CVSITRAPGL GLELDYDQLG KLNDQYHSCG IRQRDDVRQM QKYTPDWKAV
KPQY