Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2911 |
Symbol | |
ID | 1184565 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3276096 |
End bp | 3277370 |
Gene Length | 1275 bp |
Protein Length | 424 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637394272 |
Product | mandelate racemase/muconate lactonizing enzyme family protein |
Protein accession | NP_792709 |
Protein GI | 28870090 |
COG category | [M] Cell wall/membrane/envelope biogenesis [R] General function prediction only |
COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.609631 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAAATCA TCCGTGTGAC CGTGACCCCC ATCGCCTTTC GCGACCCGCC GCTGCTCAAC GCCAGCGGTA TCCATGAACC CTTTGCCTTG CGCTCGATCA TCGAGATAGA GAGCGACAAC GGTTATATCG GCCTCGGCGA AAGTTACGGC GACGCGCCAG CACTGGCGAT TCAGCAGCAG GTACAGAACC AGTTGATCGG CATCGACCCG TTCAACCTCA ATCAATTGCG CAGCATCGTT CAGGCCACCG TTGCGGCACA CAAGCCCGCC AGCCTGGCCG GTGCCGAACT CGCGCCGGGC TCGCATGCCA GCAAGGCGGT GAGCAATGCC TATTCGGCAT TCGAGGTGGC GTTTCTGGAC CTGCAGGCAC GCTCCATGAA CCTGCCACTG GTGGACCTGC TGGGTGGTGC GATTCGCGAG CGTATTCCGT TCAGCGCCTA CCTGTTCTTC AAGTACGCGC AGCACATCGA CACGCCCTAC CCACCAGACA ACTGGGGCGA GGCGCTGAAC GAAGAACAGA TCGTCGCCCA GGCCCGACGC ATGATCGAGG CCTATGGCTT CAAAAGCATC AAGCTCAAGG CCGGCGCGCT GGACCCTGAA CACGAAGTGT CGTGCATCAA GGCCTTGAAA AAGGCATTCC CCGGCTACCC GCTACGCATC GACCCCAACG GCAACTGGTC GCTGGAAACC TCGATTCGCA TGGCGCAGCT GCTCGGCGAT GACTTGCAGT ACTACGAAGA CCCTACGCCG GGCCTGGACG GCATGTCCGA ACTGCACAAA CGCACCGGGC TACCGCTGGC GACCAACATG GTGGTCACCG ACTTCGACGA ATTTCGCCGC AGCGTGGCCC TGAACAGCGT GCAGATCGTG CTCGCCGACC ACCATTACTG GGGCGGCCTG CGCGACACCC AGGCGCTGGC GAAGATGTGC GACACCTTTG GCCTTGGCGT GTCGATGCAT TCCAATTCCC ACTTGGGCAT CAGCCTCATG GCCATGGCGC ATGTGGCCGC CTCGGTACCC AATCTGGATT ACGCCTGCGA CACACATTAC CCGTGGCAGG AAGCGGACGA AGAAGTCATC AAGGGCGGCA AACTGCCGAT TGTCGACGGC TGCGTCAGCA TCACCCGCGC GCCTGGCCTG GGCCTCGAAC TGGATTACGA CCAGCTCGGC AAGCTCAACG ACCAGTACCA CAGCTGCGGC ATTCGTCAGC GCGATGATGT GAGGCAGATG CAGAAGTACA CACCGGACTG GAAGGCCGTC AAACCGCAGT ATTAG
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Protein sequence | MKIIRVTVTP IAFRDPPLLN ASGIHEPFAL RSIIEIESDN GYIGLGESYG DAPALAIQQQ VQNQLIGIDP FNLNQLRSIV QATVAAHKPA SLAGAELAPG SHASKAVSNA YSAFEVAFLD LQARSMNLPL VDLLGGAIRE RIPFSAYLFF KYAQHIDTPY PPDNWGEALN EEQIVAQARR MIEAYGFKSI KLKAGALDPE HEVSCIKALK KAFPGYPLRI DPNGNWSLET SIRMAQLLGD DLQYYEDPTP GLDGMSELHK RTGLPLATNM VVTDFDEFRR SVALNSVQIV LADHHYWGGL RDTQALAKMC DTFGLGVSMH SNSHLGISLM AMAHVAASVP NLDYACDTHY PWQEADEEVI KGGKLPIVDG CVSITRAPGL GLELDYDQLG KLNDQYHSCG IRQRDDVRQM QKYTPDWKAV KPQY
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