Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2907 |
Symbol | |
ID | 1184561 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3270583 |
End bp | 3272553 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637394268 |
Product | GGDEF domain/EAL domain protein |
Protein accession | NP_792705 |
Protein GI | 28870086 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGAAAA AACTAGCGGG TGCCTTGCGC ACCCTGATGT CTGTGCCTGC TGATAACCCC AGGCTGCTTG AGGCCCAATA CGTCGCGTTG TCCCGACAAC TGCCTTTGAT GTACTTCGTG TTGCTGGTCA ACACCTGGGC GCTGGCCTTC ACCCACCGCG AAACTGCGCC TGTGTGGCTG ACGCTGCTGG TGCCGGTGTT GCTCACGGTC ATTTGCGGCA TTCGTGCCCG CAAGTGGCTG CTCACGGTTA ACCGTCCGCC GCCCGCTGCG GCAACCATTC TGGCGACCTT GCGCGGCACC AACAGCCTGG CCGGCGTCAT AGCCGCCGGT TTTGCTGCGT GGTCACTGTC GCTTTACCCC TATGGCGGCC CCTATGCTCA GGCGCATGTG GCGTTTTTCA TGGGTATTAC GGTGATCGTC TGCATCTTCT GCATGATGCA CCTGCGGCCT GCGGCGTTGA CCACGGCGGT GGTGGTCAAC ACGGCGTTCG TTATTTTCTT CGCCTCGACG CACAACCTCA TCTTTATCGC CACGGCGGTG AACATCGTTC TGGTGTCGAT CGGCATGCTG ATCATTCTCC ATCACCAGTA CCGCGACTTC ACCAGCCTGG TGGACGTTCA GGTGCGCACC GAGCAACTGA GCAATGAAAA TCTGTTGCTG GCCAATAAGG ACAGCCTGAC CGGCCTGCCA AACCGTCGGC AGTTCTTTCA GACCCTGGAC GCCGCCATGA GCGAGGCGCT GGCACTGCGT AGCAAGCTGG CAGTGGGGGT GCTGGATCTG GACGGGTTCA AACCGGTCAA TGACCTTTAT GGCCACCGTA CTGGCGACCG TCTGCTGATG CTGGTCGCCG AACGCCTGAA CAGTGTGGCG AGCAACACGG TGCATGTGTC CCGACTGGGC GGCGACGAGT TCGCGCTGGT CATCAAGGGT GACATCAGCA ACGAGGCGTT GCTTGCACTC GGCAAGCACC TGTGCGACCT GATGCACGAA AGTTTCGAAC TGTCCGACAT GCCGATCCAG ATCGGCGCGA CGCTGGGCAT GGCAACGTTT CCGGCCAGCG CCGATAACGC GACTCAGCTG TTTGAATTTG CCGATTACGC GCTGTATCAA GGCAAGAATC ATAACCCGGG AACTACCTGC CTGTTCTCTG CCAGCCACCG TGAGCAGTTG CACACCGATG GTGTGACCGA GCAGGCATTG CGCCGAGCCA ATCTTGAGAC CGAGTTTCAT GTGATGTTTC AGCCGATCAT TGAAAGCTGT ACATGCGAAA CGGTGGCTTT CGAGGCGCTG GCGCGTTGGA ACAGCCCGGA ACTGGGGGCG GTGTCTCCGG CGCATTTCAT TCCGATTGCC GAGCGAATCG GCATGATCAA CAAACTGACG GCGCCCTTGC TGACTCACGC GCTGCAGATG GCCTTATCGT GGCCGGCGCC CATCAGGCTG TCGTTCAACC TGTCGGCCCA CGACTGCGCG ACGTGGGAGA GCGTCAGCAC GATTGTCGAA ATCATCGAAA ACAGTGGGTT CGATGCCTCG CGGCTTGATC TGGAAATCAC CGAAACGGCC GTGATGCAGG ATATCGCCCA GGTACAGCAG GCCATTGCGC AGTTCCGGCA ACTGGGGTGT GGCATCTCGC TGGACGACTT TGGCACCGGT TTTTCAAGCC TGAGCCAGTT GCATGCGCTG GCGCTGACCA AGCTCAAGAT TGACCGCAGC TTTGTAACCG GCGTGCATGA CAACCCGGCC AGTTACAAGA TCGTCAAATC GCTGGTTGCC TTGAGCCTGG ATATGTCACT TGGCTGTGTG ATCGAAGGCG TCGAGACCCA GGATGAGCTC AACGCACTGA CCAGCCTCGG TTGCACGATG GTGCAGGGCT ACTTCTACAG CCCGCCGATC AGTTTTGCCG AGACGCTGGC CTGGCTTGAA ACGCCGGATC ACGAGCGTGC GTTCGGTTAT GCAGCCGCGT GCCGTATCTG A
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Protein sequence | MLKKLAGALR TLMSVPADNP RLLEAQYVAL SRQLPLMYFV LLVNTWALAF THRETAPVWL TLLVPVLLTV ICGIRARKWL LTVNRPPPAA ATILATLRGT NSLAGVIAAG FAAWSLSLYP YGGPYAQAHV AFFMGITVIV CIFCMMHLRP AALTTAVVVN TAFVIFFAST HNLIFIATAV NIVLVSIGML IILHHQYRDF TSLVDVQVRT EQLSNENLLL ANKDSLTGLP NRRQFFQTLD AAMSEALALR SKLAVGVLDL DGFKPVNDLY GHRTGDRLLM LVAERLNSVA SNTVHVSRLG GDEFALVIKG DISNEALLAL GKHLCDLMHE SFELSDMPIQ IGATLGMATF PASADNATQL FEFADYALYQ GKNHNPGTTC LFSASHREQL HTDGVTEQAL RRANLETEFH VMFQPIIESC TCETVAFEAL ARWNSPELGA VSPAHFIPIA ERIGMINKLT APLLTHALQM ALSWPAPIRL SFNLSAHDCA TWESVSTIVE IIENSGFDAS RLDLEITETA VMQDIAQVQQ AIAQFRQLGC GISLDDFGTG FSSLSQLHAL ALTKLKIDRS FVTGVHDNPA SYKIVKSLVA LSLDMSLGCV IEGVETQDEL NALTSLGCTM VQGYFYSPPI SFAETLAWLE TPDHERAFGY AAACRI
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