| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2905 |
|---|
| Symbol | vanB |
|---|
| ID | 1184559 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3268846 |
|---|
| End bp | 3269796 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637394266 |
|---|
| Product | vanillate O-demethylase oxidoreductase |
|---|
| Protein accession | NP_792703 |
|---|
| Protein GI | 28870084 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1018] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.144739 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGACG TGACCGTCTT ATCGCGTAAC GACGAAGCAC TGGGTATCTG CAGTTTTGAG
TTGGCGCGCC CGGACGGGCA GCCACTGCCG CCCTTCACCG CTGGCGCACA CATCGACGTG
CACCTGCCTG ACGGGCTGAT TCGGCAATAC TCGCTGTGCA ACGCGCCGAA CGAGCACCAT
CGCTACCTGA TCGGCGTACT CAATGACCCC GCATCACGTG GCGGATCGCG CGGGTTGCAT
GAGCAGATAA AGCCCGGCGC ACAATTGCGC ATCAGCGAAC CGCGCAATCT GTTTCCACTG
GCGGAAAACA GTCGTCGCAC ACTGTTGTTT GGCGGCGGCA TCGGCATTAC GCCGATCCTG
TGCATGGCCG AGCAGCTCAC GCTGGAAGGT GCGGATTTCG AGCTGCATTA CTGCATTCGT
TCCGCCGAGC GCGGTGCCTT CATCAAGCGG CTCAGGCAAT CACCTTTTGC AGAGCGGGTC
ACCCTGCACC TGGATGAGCA GCCTGACACC GCACTGGACG CTCCCAGAGT GCTCGCCAAT
CCAGACGCCC AGACGCACCT GTATGTGTGC GGCCCAGGTG GTTTCATGCA ACACATCCTC
GACAGCGCGC GGGCTGCCGG CTGGGTCGAG GACAATCTGC ATCGTGAGTA TTTTTCGGCC
GAGCCGGTGG ACACCAGCAA CGACGGCAGT TTTTCGATAG AAATCGCCAG TACCGGCCAG
GTGATCGCCA TTGCGGCCAA CAAGACTGTC GCTCAGGTGC TGGAAAGCCA CGGTATCGAT
ATTCCCCTGT CGTGCGAGCA AGGGGTATGC GGGACATGCC TGACCCGCGT CTTGAAGGGC
GTGCCTGACC ATCGGGACCT GTTTCTGACC GAAGAAGAGC AAGCGCTCAA CGATCAGTTC
ACACCTTGCT GCTCGCGCTC TAAAACCCCT TTGCTGGTGC TCGATCTCTG A
|
|---|
| Protein sequence | MIDVTVLSRN DEALGICSFE LARPDGQPLP PFTAGAHIDV HLPDGLIRQY SLCNAPNEHH
RYLIGVLNDP ASRGGSRGLH EQIKPGAQLR ISEPRNLFPL AENSRRTLLF GGGIGITPIL
CMAEQLTLEG ADFELHYCIR SAERGAFIKR LRQSPFAERV TLHLDEQPDT ALDAPRVLAN
PDAQTHLYVC GPGGFMQHIL DSARAAGWVE DNLHREYFSA EPVDTSNDGS FSIEIASTGQ
VIAIAANKTV AQVLESHGID IPLSCEQGVC GTCLTRVLKG VPDHRDLFLT EEEQALNDQF
TPCCSRSKTP LLVLDL
|
|---|
| |