Gene PSPTO_2904 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2904 
SymbolvanA 
ID1184558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3267712 
End bp3268776 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content60% 
IMG OID637394265 
Productvanillate O-demethylase, oxygenase subunit 
Protein accessionNP_792702 
Protein GI28870083 
COG category[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.179444 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACCCGA AAAACGCATG GTACGTCGCC TGTACAGCGG ATGAAGTCGC CGACAAGCCG 
CTTGGCCGGC AGATCTGTAA CGAGAAGATG GTGTTCTATC GCGACCAGAA CCAACAGGTC
GTCGCCGTCG AGGACTTCTG CCCGCACCGC GGTGCCCCGC TCTCGTTGGG TTACGTCGAA
AACGGCCAAC TGGTGTGCGG CTACCACGGG CTGGTAATGG GCGGCGATGG CAAGACGGCC
TCCATGCCGG GTCAGCGTGT TCGCGGTTTC CCCTGCAACA AGACCTTCGC AGCGATCGAG
CGTTATGGTT TTATCTGGGT CTGGCCGGGC GAACGGGAAA AAGCAGACCC GGCGCTGATC
CATCACCTGG AGTGGGCGGT CAGCGACGAA TGGGCCTACG GCGGTGGCCT GTTTCACATC
CAGTGCGACT ACCGCCTGAT GATCGACAAC CTGATGGACC TCACGCACGA AACCTACGTG
CACGCGTCGA GCATCGGCCA GAAGGAAATC GACGAAGCGC CGCCAGTCAC CACCGTCGAA
GGCGAGGAAG TCATTACTGC GCGCCACATG GAAAACATCA TGCCGCCGCC GTTCTGGAAG
ATGGCCCTGC GCGGCAACAA CCTGGCCGAT GATGTGCCGG TGGATCGCTG GCAGATCTGC
CGCTTTACCC CGCCCAGCCA TGTATTGATC GAAGTGGGTG TGGCCCACGC CGGCAAAGGC
GGCTATCACG CCCCTCATGA ATTCAAGGCA TCGAGCATCG TGGTCGATTT CATCACCCCG
GAAACCGACA CATCCATCTG GTACTTCTGG GGCATGGCGC GCAATTTCAA ACCGGCTGAT
GAACAACTGA CGGCCACCAT TCGCGAAGGC CAGCACAAGA TCTTCAGCGA AGACCTGGAA
ATGCTCGAGC GCCAACAGCT GAACCTGCTT CAGCACCCGC ATCGCAACCT GCTCAAACTC
AATATCGACG CAGGCGGCGT GCAGTCACGA AAGATTCTCG AGCGCTTGAT AGCCGCTGAA
CAAGCCGACA CGGCTGACCA GATCCCTGTG GCGGCGGTTA AATAA
 
Protein sequence
MHPKNAWYVA CTADEVADKP LGRQICNEKM VFYRDQNQQV VAVEDFCPHR GAPLSLGYVE 
NGQLVCGYHG LVMGGDGKTA SMPGQRVRGF PCNKTFAAIE RYGFIWVWPG EREKADPALI
HHLEWAVSDE WAYGGGLFHI QCDYRLMIDN LMDLTHETYV HASSIGQKEI DEAPPVTTVE
GEEVITARHM ENIMPPPFWK MALRGNNLAD DVPVDRWQIC RFTPPSHVLI EVGVAHAGKG
GYHAPHEFKA SSIVVDFITP ETDTSIWYFW GMARNFKPAD EQLTATIREG QHKIFSEDLE
MLERQQLNLL QHPHRNLLKL NIDAGGVQSR KILERLIAAE QADTADQIPV AAVK