| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2904 |
|---|
| Symbol | vanA |
|---|
| ID | 1184558 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3267712 |
|---|
| End bp | 3268776 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637394265 |
|---|
| Product | vanillate O-demethylase, oxygenase subunit |
|---|
| Protein accession | NP_792702 |
|---|
| Protein GI | 28870083 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.179444 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACCCGA AAAACGCATG GTACGTCGCC TGTACAGCGG ATGAAGTCGC CGACAAGCCG
CTTGGCCGGC AGATCTGTAA CGAGAAGATG GTGTTCTATC GCGACCAGAA CCAACAGGTC
GTCGCCGTCG AGGACTTCTG CCCGCACCGC GGTGCCCCGC TCTCGTTGGG TTACGTCGAA
AACGGCCAAC TGGTGTGCGG CTACCACGGG CTGGTAATGG GCGGCGATGG CAAGACGGCC
TCCATGCCGG GTCAGCGTGT TCGCGGTTTC CCCTGCAACA AGACCTTCGC AGCGATCGAG
CGTTATGGTT TTATCTGGGT CTGGCCGGGC GAACGGGAAA AAGCAGACCC GGCGCTGATC
CATCACCTGG AGTGGGCGGT CAGCGACGAA TGGGCCTACG GCGGTGGCCT GTTTCACATC
CAGTGCGACT ACCGCCTGAT GATCGACAAC CTGATGGACC TCACGCACGA AACCTACGTG
CACGCGTCGA GCATCGGCCA GAAGGAAATC GACGAAGCGC CGCCAGTCAC CACCGTCGAA
GGCGAGGAAG TCATTACTGC GCGCCACATG GAAAACATCA TGCCGCCGCC GTTCTGGAAG
ATGGCCCTGC GCGGCAACAA CCTGGCCGAT GATGTGCCGG TGGATCGCTG GCAGATCTGC
CGCTTTACCC CGCCCAGCCA TGTATTGATC GAAGTGGGTG TGGCCCACGC CGGCAAAGGC
GGCTATCACG CCCCTCATGA ATTCAAGGCA TCGAGCATCG TGGTCGATTT CATCACCCCG
GAAACCGACA CATCCATCTG GTACTTCTGG GGCATGGCGC GCAATTTCAA ACCGGCTGAT
GAACAACTGA CGGCCACCAT TCGCGAAGGC CAGCACAAGA TCTTCAGCGA AGACCTGGAA
ATGCTCGAGC GCCAACAGCT GAACCTGCTT CAGCACCCGC ATCGCAACCT GCTCAAACTC
AATATCGACG CAGGCGGCGT GCAGTCACGA AAGATTCTCG AGCGCTTGAT AGCCGCTGAA
CAAGCCGACA CGGCTGACCA GATCCCTGTG GCGGCGGTTA AATAA
|
|---|
| Protein sequence | MHPKNAWYVA CTADEVADKP LGRQICNEKM VFYRDQNQQV VAVEDFCPHR GAPLSLGYVE
NGQLVCGYHG LVMGGDGKTA SMPGQRVRGF PCNKTFAAIE RYGFIWVWPG EREKADPALI
HHLEWAVSDE WAYGGGLFHI QCDYRLMIDN LMDLTHETYV HASSIGQKEI DEAPPVTTVE
GEEVITARHM ENIMPPPFWK MALRGNNLAD DVPVDRWQIC RFTPPSHVLI EVGVAHAGKG
GYHAPHEFKA SSIVVDFITP ETDTSIWYFW GMARNFKPAD EQLTATIREG QHKIFSEDLE
MLERQQLNLL QHPHRNLLKL NIDAGGVQSR KILERLIAAE QADTADQIPV AAVK
|
|---|
| |