Gene PSPTO_2883 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2883 
Symbol 
ID1184537 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3246195 
End bp3247556 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content56% 
IMG OID637394246 
Productmethyl-accepting chemotaxis protein 
Protein accessionNP_792683 
Protein GI28870064 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.536147 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGATG AAGAGTGCAA GCCCAAACTG TCCCGGATAG CCGCAATGTT CAACTCTCAT 
TTGAAAAAAA CCAACCAGGC ATTGGAGCGC CGTCTCGCCA TGCTCGAGCA AGCAGGGCAC
ATTCTGAATC TGGAGACCGT TGCCGTCGTT CTGGACAGGC AGGGCAAGGT GCAGACCGTC
AACGGCCTGT TCGAGACGGA GCTGAGCTAC TCACAAAGCG AGATTGCCGG GCGTAGCCTT
TCTGAAATGA GCCCGCCCGA GTTGAGCGGC GACACTCACC AGAAGCGCGC TTTGGCTGCG
ATTCGGGACG GCAAGCATTT CAGCGGCACG TTGCGGCTGG TCAGCAAGAC AGGTGCAAGG
GTCTGGTTGA GGACTGTGGT GGTGCCGTTC AAGAATGAGA CTGGCGGCAT CGAGCAGATC
ACGTTGTACT CAAGCGTTTT GACCCGAACT ATTGAGGCCT CGCGTGAGAA TGAGGCGCTG
GTCAATGCGT TACAGCGGTC CACCGCCGTC ATCGAATTCA CCCTTGACGG AATGGTCATT
ACCGCCAATG ACAACTTCCT GAAAGCGATG GGTTATGAGC TGAATCAGAT AAAGGGCAAG
CATCACAAGA TGTTCTGCGT GCCTGAAGAA TCCAACGCTG ACGCGTATAG CCACTTCTGG
GAAAGATTGC GTCGAGGCGA GTTTATCGTC GATCGTTTTC GCCGGGTCGA CAAGGCTGGC
CGCGACGTGT GGCTGGAGGC GTCCTATAAC CCTATTACCG ACGCAAACGG CAAGCTCTAT
AAAATTGCAA AGTTCGCGAC GGTTATTACT GAGCAGGTTG AGCGTGAAAA GGCCGTTGCC
GAAGCGTCGG ACATGGCCTA TCAAACGTCT ATCGATACCG ATGCCAGTGC ACAGCAAGGA
CGAAAGGTCA TCAAGGACAC GCTGCAGATG CTGGGTCAGT TGACGATTTC CATGGAAGAC
GCCACGCGAG GCATCGAGGC ACTGGACTCT CAGAGCCAGG TGATTGGCAC GATCATAAAA
ACCATCAGCG GGATCGCCGA GCAAACCAAT CTGCTCGCGT TGAACGCCGC CATCGAAGCT
GCCCGGGCCG GTGAACAGGG CAGGGGGTTC GCGGTAGTGG CCGACGAGGT CCGCCAGTTG
GCGTCGCGCA CGACAAAAGC GGCAGAAGAA GTGGTCAACG TCGTCAAGAA GAACCAGAGC
CTGGCGTCCG AGGCAGTCAA TGTAATCGTG CGCAGTACCG AACAGGCTTC CGGCGCACTG
GAGCTGGCTA ACGATGCAGA TCGTGTCATC CAGGAAATCC AGCAAGGCGC GAACACGGTA
GTGCGCGCCG TCAGCCGTTT TGTTAATCAG CGTTCGAGTT AG
 
Protein sequence
MTDEECKPKL SRIAAMFNSH LKKTNQALER RLAMLEQAGH ILNLETVAVV LDRQGKVQTV 
NGLFETELSY SQSEIAGRSL SEMSPPELSG DTHQKRALAA IRDGKHFSGT LRLVSKTGAR
VWLRTVVVPF KNETGGIEQI TLYSSVLTRT IEASRENEAL VNALQRSTAV IEFTLDGMVI
TANDNFLKAM GYELNQIKGK HHKMFCVPEE SNADAYSHFW ERLRRGEFIV DRFRRVDKAG
RDVWLEASYN PITDANGKLY KIAKFATVIT EQVEREKAVA EASDMAYQTS IDTDASAQQG
RKVIKDTLQM LGQLTISMED ATRGIEALDS QSQVIGTIIK TISGIAEQTN LLALNAAIEA
ARAGEQGRGF AVVADEVRQL ASRTTKAAEE VVNVVKKNQS LASEAVNVIV RSTEQASGAL
ELANDADRVI QEIQQGANTV VRAVSRFVNQ RSS