| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2856 |
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| Symbol | |
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| ID | 1184510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3209245 |
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| End bp | 3210549 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637394220 |
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| Product | site-specific recombinase, phage integrase family |
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| Protein accession | NP_792657 |
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| Protein GI | 28870038 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0175495 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGCGC CGACGACTCT GCATCCGCTT TTTGAAACCT ACGCCCGCTT CGGTGACCTA
AATTTCAGCT CACTTAAGCA TGAGTTACCG TGCATTAATG AGTACCTTTC GGCGTTCCCG
CCCGAGATCC AAGCCGTTGA GGGTTATCGA GCCGTTCGGA GCTTTTTAAA ATCCTATGCG
GGAAATGAGT CCACCTTCAA TTCCTACCGG ACGCATGTTG AGCGATTGCT TCTATGGACA
CTTATCAAGT CAAAGGTTCC TCTGCTAGAG ATGCGTCGTA CTAATGCGGA AGAGTTTTTA
GAGTTCTGTC TAGCGCCCGA TCCCGGCTGG GTTAAGCCGG TCGTGAAATC TAGATTCATC
CGAGTAGGTA CCCGCAGAAA GCTAGCAACT GACACGTATA CGCTTAATCC AGACTGGAGC
CCTTTCAGTC AATCTGTTTC TAAAGAAGAA CGAAAGCGCG CGAAAGAAGA GAGCCGCCCT
ATTCTTCAAG AAAACTACAA ACCCGCGCAA GGCTCAATCG CGCAAATTTT TGCTGTCTGC
GGTAGTTTTT TTCAACATGC CATTGATGAA GGTTTCTGTG AGCACAACCC GTTCAGGGCG
GTGAAACAAA AGAGCAAGTA CAAGCAGCGT ACAACAGGAG AGCATGAGAG CCGCATCCTG
ACTTCGTTGC AGTGGGATTT CGTTTTGGAA ACGGCCGAGC AATTGGCTAC TCAGAACCCC
AAGTATGAAA GAACCTTGTT CATTGTTGCG ACGATTTTTG CTATGTACCT GCGTGTCTCC
GACTTGGTGG GGAGGGAGAA CTGGACGCCA AGTATGGGGG ATTTGCGCAA GGATGGAGCT
GGCAACTGGT GGTATCACGT CGTAGGTAAG GGTAACAAAG CAGGCAAGAT AAGTGTACGA
GATGACTACG TAGAGAATTA CCTAAAGCGT TGGCGCGTGC ATCAGGGCCT ATCTCCCCTC
CCCGGTTTCA GGGAAACCAC TCCTTTAATT GCCACCCAAC GCGGACGAGC CGGACTGTCA
GATCGGCATG TCAGATTACT GCTGCAAGAG GTATTCGACC GAGCATTGGA ACGTATGCAG
GCGGAAAATT GGGCTGACGA GGACGTCAGT AGACTGCGTG CAGCTTCACT TCACTGGCTC
CGTCATACAT CAGCAACTTT CGATGCCCCG TATCGAGACA TGAAGGACCT TCAGGTTGAT
CTTCGACATA ATAGCTTAAG CACCACACAG AATGTGTACT ATAACTCAGA GGATGAGAAA
AGAGCTTACT CTATCAAGCG TTTACCTATG AAAGAACGCA CTTGA
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| Protein sequence | MPAPTTLHPL FETYARFGDL NFSSLKHELP CINEYLSAFP PEIQAVEGYR AVRSFLKSYA
GNESTFNSYR THVERLLLWT LIKSKVPLLE MRRTNAEEFL EFCLAPDPGW VKPVVKSRFI
RVGTRRKLAT DTYTLNPDWS PFSQSVSKEE RKRAKEESRP ILQENYKPAQ GSIAQIFAVC
GSFFQHAIDE GFCEHNPFRA VKQKSKYKQR TTGEHESRIL TSLQWDFVLE TAEQLATQNP
KYERTLFIVA TIFAMYLRVS DLVGRENWTP SMGDLRKDGA GNWWYHVVGK GNKAGKISVR
DDYVENYLKR WRVHQGLSPL PGFRETTPLI ATQRGRAGLS DRHVRLLLQE VFDRALERMQ
AENWADEDVS RLRAASLHWL RHTSATFDAP YRDMKDLQVD LRHNSLSTTQ NVYYNSEDEK
RAYSIKRLPM KERT
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