Gene PSPTO_2832 details

Gene Information

• Locus tag: PSPTO_2832
• Symbol: syfD
• ID: 1184486
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 3181322
• End bp: 3183328
• Gene Length: 2007 bp
• Protein Length: 668 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637394199
• Product: syringolide efflux protein SyfD
• Protein accession: NP_792636
• Protein GI: 28870017
• COG category: [V] Defense mechanisms
• COG ID: [COG0577] ABC-type antimicrobial peptide transport system, permease component; [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.237626
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCAGA AGGTAGACAT CGAAGCGTTG CACGAAACGT CGATCAACAG CGACCAACCG 
CTGCTGCGCC TGCAACAGGT CAGCCGCAGC TTCATGGCAG GCGACCGCGA ATTTCAGGTC 
CTCAAGCACA TCGACCTGGC CATTCACACC GGCGAACTGG TGGCGATCAT CGGTGCATCG 
GGCTCGGGCA AATCAACCCT GATGAACATT CTCGGTTGCC TGGACCATGC CAGCGCCGGC 
AGCTATCAGG TCAACGGGCA GGAAACCCGC GAGCTGGATG ACGATGCGCT GGCAGCGCTG 
CGCCGCGACC ATTTTGGCTT CATTTTCCAG CGCTACCATT TGTTGCCGCA CCTGGATGCG 
GTTCGCAATG TGGAGATTCC GGCCATTTAC GCCGGCACCG CGCAGACCAC GCGCCATGAG 
CGTGCTCAGG CATTGCTCAC GCGCCTGGGA CTGGGCGGGC ATCTGCAGCA TCGGCCCAGC 
CAGATGTCCG GCGGTCAGCA GCAACGCGTG AGCATCGCCA GAGCGTTGAT GAACGGCGGG 
CAGGTGATAC TGGCCGATGA GCCGACCGGC GCACTGGATA CCGCCAGCGG CAAGGAAGTC 
ATGCGCACGC TGCTGGAACT GCATGCCGCG GGCCATACTG TGATTCTGGT AACGCACGAC 
CCCAAGGTGG CTGCCAACGC CGAGCGGATT ATCGAAGTCA GCGACGGCGA AATCATCAGT 
GACCGACGCA CGGCGCAGAC AACGCAGCCC GCGCCCGAAG CGCAGCCAGC CACGCCGCCA 
GGTCCCGCGC CCAGGCGTCT GTTGGCCAGC CTGGGGCTGT TCCGTGAAGC GTTCAATATG 
GCCTGGATCG CGCTGATATC GCACCGCATG CGCACCTTGC TGACCATGCT TGGCATCATC 
ATCGGTATCA CCTCGGTGGT CTCGATCTCA GCCATTGGCG AAGGCGCCAA GCGCTATGTG 
CTCAAGGACA TCCAGTCCAT CGGAAGCAAC ACCATCGACA TCTATGCCGG CGCCAACTTT 
GGTGACAGCC GGGCCAAATC CATCGAAACG CTGCTTCCCT CAGACGTTGC CGCGCTCAAT 
CAGCTGTATT ACATCGACAG CGCCACCCCC GTGGTCGGTC GCAGCATGCT GGTGCGCTAC 
CGCAACGTCG ATGTGGACGC ACAGCTCAAT GGCGTCAGCA GCCGCTATTT TCAGGTGCGC 
AACATCCAGC TGGCAGCCGG CATCACGTTC AGTGATCAGG ATGCCCGGCG TCAGGCTCAG 
GTGGTGGTGC TCGACCACAA CACCGCTCAA CGCCTGTTCG GGCCGGGCGT CAACCCGCTG 
GGGCAGGTGA TTCTGGTCGG CAAACTGCCG TGCACGGTGA TCGGCGTCAC CAGCGACCAT 
AAAAACCTGT TCATCGCCGG TAACACGCTC AACCTGTGGA TGCCTTATGA AACGGCGGCG 
GGGCGGGTGC TGGGGCAGCG ACATCTGGAC AGCATCAGCG TGCGGGTCAA GGACGGCATG 
CCGAGCAAGG CGGTGGAAGA GCAGATCAAG GCACTGATGC TGCAGCGTCA CGGCACCAAG 
GACTTCTTCA CCAACAACCT CGACAGCGTC ATGCAGACGG TACAGAAAAC CAGCCGCTCG 
CTGACCCTGT TGTTGTCGCT GATTGCGGTT ATCTCCCTGG TGGTGGGCGG AATCGGGGTG 
ATGAACATCA TGCTGGTGTC GGTGACCGAG CGCACTCGCG AAATCGGCAT CCGCATGGCC 
GTCGGCGCGC GTCAGTCGGA CATTCGCCAG CAATTTCTGG TCGAGGCGGT CATGGTCTGC 
CTGATGGGCG GGGTAATCGG TATCGGCCTG TCCTACGCCA TCGGCTATCT GTTTACCTTG 
TTCGTCCAGC AGTGGGAAAT GGTCTTTTCA CTGGCCTCGG TGGTGACCGC ATTCGCCTGT 
TCGACCTTGA TCGGCGTGCT GTTCGGCTTT GTGCCTGCAC GCAATGCCGC CCGTCTGGAC 
CCTATCGAAG CGCTGGCGCG GGACTGA 

 

Protein sequence

MNQKVDIEAL HETSINSDQP LLRLQQVSRS FMAGDREFQV LKHIDLAIHT GELVAIIGAS 
GSGKSTLMNI LGCLDHASAG SYQVNGQETR ELDDDALAAL RRDHFGFIFQ RYHLLPHLDA 
VRNVEIPAIY AGTAQTTRHE RAQALLTRLG LGGHLQHRPS QMSGGQQQRV SIARALMNGG 
QVILADEPTG ALDTASGKEV MRTLLELHAA GHTVILVTHD PKVAANAERI IEVSDGEIIS 
DRRTAQTTQP APEAQPATPP GPAPRRLLAS LGLFREAFNM AWIALISHRM RTLLTMLGII 
IGITSVVSIS AIGEGAKRYV LKDIQSIGSN TIDIYAGANF GDSRAKSIET LLPSDVAALN 
QLYYIDSATP VVGRSMLVRY RNVDVDAQLN GVSSRYFQVR NIQLAAGITF SDQDARRQAQ 
VVVLDHNTAQ RLFGPGVNPL GQVILVGKLP CTVIGVTSDH KNLFIAGNTL NLWMPYETAA 
GRVLGQRHLD SISVRVKDGM PSKAVEEQIK ALMLQRHGTK DFFTNNLDSV MQTVQKTSRS 
LTLLLSLIAV ISLVVGGIGV MNIMLVSVTE RTREIGIRMA VGARQSDIRQ QFLVEAVMVC 
LMGGVIGIGL SYAIGYLFTL FVQQWEMVFS LASVVTAFAC STLIGVLFGF VPARNAARLD 
PIEALARD