| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2828 |
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| Symbol | syrR |
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| ID | 1184482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3151815 |
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| End bp | 3152588 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637394195 |
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| Product | transcriptional regulator SyrR |
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| Protein accession | NP_792632 |
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| Protein GI | 28870013 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00104787 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACGG CGCAATACCC CGAATACAGT AGCGATCCGC GTTTTTATCA GCAGTTGGCT
CAACTCGTCT CCAGCACCGG CTGCGCTACA TTTGCCGGGC ACATGCTGCA ACTGGTGGAT
GCACTGGTGC CCATTCACGG GCTTGGCCTC AGTGAATGGA CGCTGGACCT GCGCCAGAGC
AGCATCAGCC GTATCAACCT GCTCGGCGGT GCCGGCCTGC AATACGACCC GCCCACCACT
GAAGCGCCGA ACCATCCGCT GCTGCCGAGC ATCCTGCACA TGCAGGACCC CTTGCTGGTG
CAGCTAAAGA CCCCGCTGAG CAAACAACAC CCGCAGCGCA ACACCCACCA GTGCAATCTG
GTTTCAAGCC AGGGCGACCG TCGGCGGATC ATCTGCTTTT ACCGCCTGAC GACCCTGCGC
GCGTTTTCCC TGAGCGAACT GTCGTTGCTC AAAAGCCTGT CTGACACCTT GTTGCCGCTG
GTCGAACATC ACGCACAAAG CCTCGTCCAG GCTGGCAGCC GGGGCGCACG CCAAGAGCCG
GAGCCCGGCT CTCTGGATCA GGCGTTCAGC GGCCGACTGG CGCAGGATTC GATCACGCTG
TCCGCACGCG AACAGGAGGT TTGCCTGGGC CTGTTGACAG GCGGAACCGT GGCTGAAATG
GCTGCGCGGC TGAAGGTCAA GAACAGCTCG GTGGAAACCT ACCTCAAGCG CGCCACCGCC
AAACTGGGGG TCAGTGGGCG GCATGGGCTG GCACGCTGGA TGGCGGGTGG CTGA
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| Protein sequence | MNTAQYPEYS SDPRFYQQLA QLVSSTGCAT FAGHMLQLVD ALVPIHGLGL SEWTLDLRQS
SISRINLLGG AGLQYDPPTT EAPNHPLLPS ILHMQDPLLV QLKTPLSKQH PQRNTHQCNL
VSSQGDRRRI ICFYRLTTLR AFSLSELSLL KSLSDTLLPL VEHHAQSLVQ AGSRGARQEP
EPGSLDQAFS GRLAQDSITL SAREQEVCLG LLTGGTVAEM AARLKVKNSS VETYLKRATA
KLGVSGRHGL ARWMAGG
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