| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2781 |
|---|
| Symbol | |
|---|
| ID | 1184435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3098807 |
|---|
| End bp | 3100042 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637394149 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_792586 |
|---|
| Protein GI | 28869967 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3616] Predicted amino acid aldolase or racemase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.609631 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCG TCGTCATGGA CACCGCTGTT ATGAACATCG CGGTTATGGA AAAAGGGGCT
GCTCAGCCGG GTGACCGCCT GCTCAGTGAT GTCAGTCTGC CTGCACTGGT TATCCACAAT
CAGGCGCTGG AGCACAACAT TCGCTGGATG CAACAGTTTG TCACCGACAG CGGCGCCGAG
CTGGCGCCGC ATGGCAAGAC CAGCATGGTC CCCGCGCTGT TTCGTCGCCA ACTGGACGCG
GGTGCCTGGG GCATGACGCT GGCGACGGCC ATCCAGACTC AGACCGCGTA CGCCCACGGT
GTGAAGCGCG TGCTGATGGC CAACCAGTTG GTGGGTGCGC CCAACATGGC GGTGATCGCC
AGTCTGCTGG CCGATCCGAT GTTTGAATTC CACTGCATGG TCGATCACCC CGACAACGTC
GCGGCGCTGG GCGAGTTTTT TGCGGCGCAC GGGCTGCGCT TGAACGTGAT GATCGAATAC
GGCGTGCCAG GTGGGCGCTG CGGGTGCCGC AGCGAAGCCG AGGTGCTGGC CCTGGCGGAT
GCCGTTCAGG CGCAACCGGC GCTGGCGCTG AGCGGAATCG AAGGTTACGA GGGCGTCATT
CACGGCGATC AGGCGATTGC CGGCATCAAG GCCTTCGCGG CATCGCTGGT CAGCCTGGCG
GTCAACCTGC AGGACAAGGG CGCGTTTGCG CTTGATCGCC CGATTGTCAC TGCGTCGGGC
TCGGCCTGGT ACGACCTGAT CGCCGAAGCA TTCGACGCCC AGGCGGTTCG CGATCGGTTT
CTCAGCGTGC TGCGCCCCGG CAGCTACGTG GTGCATGACC ACGGCATCTA TAAAGACGCG
CAATGCTGCG TGCTGGACCG ACGCGCCGAG TTGAGCGAAG CGCTGCGTCC GGCGCTGGAG
GTCTGGGCGC ATGTGCAGTC CATGCCTGAG CCGGGCTTTG CCGTGATTGC CATGGGCAAG
CGCGATGTGG CCTACGATGC AGGCTTGCCC AACCCGTTGT TGCGCTACAC ACCGGGCGTA
TCGTCAGCAC CGGGCGATGA CGTCAGCGCC TGCAAGGTCA CTGCGGTGAT GGATCAGCAC
GCCTTCATGA CGGTCGCTGC GGATTGCGAA TTGAAGGTGG GTGACATCAT TTCCTTCGGC
ACCTCACACC CGTGTCTGAC CTTCGACAAG TGGCGTTCAG GTTGTCTGGT GGATGATGAC
CTGCGGGTGA TCGAGCCTTT TCATACCTGT TTCTAG
|
|---|
| Protein sequence | MSTVVMDTAV MNIAVMEKGA AQPGDRLLSD VSLPALVIHN QALEHNIRWM QQFVTDSGAE
LAPHGKTSMV PALFRRQLDA GAWGMTLATA IQTQTAYAHG VKRVLMANQL VGAPNMAVIA
SLLADPMFEF HCMVDHPDNV AALGEFFAAH GLRLNVMIEY GVPGGRCGCR SEAEVLALAD
AVQAQPALAL SGIEGYEGVI HGDQAIAGIK AFAASLVSLA VNLQDKGAFA LDRPIVTASG
SAWYDLIAEA FDAQAVRDRF LSVLRPGSYV VHDHGIYKDA QCCVLDRRAE LSEALRPALE
VWAHVQSMPE PGFAVIAMGK RDVAYDAGLP NPLLRYTPGV SSAPGDDVSA CKVTAVMDQH
AFMTVAADCE LKVGDIISFG TSHPCLTFDK WRSGCLVDDD LRVIEPFHTC F
|
|---|
| |