| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2757 |
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| Symbol | |
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| ID | 1184411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3070860 |
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| End bp | 3072971 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637394125 |
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| Product | GGDEF domain/EAL domain protein |
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| Protein accession | NP_792562 |
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| Protein GI | 28869943 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.203015 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGATTG GCAGTTATAC CCCCTCGCTT GTCATGATCT CCGTTCTCGT CGCGATTATT
GCTTCGTACG CTGCTCTGGA TCTGACCGGC CGTATTATTT CGGCCAAGGG CCGTGCGGTT
TATGTATGGA TCGCCGGCGG TGCGTTGGCG CTGGGCGTTG GTGGCTGGTC GACGCATTTC
ATTGGCATGC TGGCGTTTGT GCTGCCTATC GACGTCGCCT ATGACGTGCC CCTTACGCTT
TTATCGCTAT TGATTGCAGT ATTGTCCTCA GGGTTTGCCC TGTGGCTGGT CACCCAGCCG
CGTCTGCCCG CCTTGCAACT GGGCCTGGGC GCGTCATTGC TGGGGCTCGG CATCAGCGCC
ATGCATTACA CCGGCATGGC GGCCATGCGC ATGCAACCCG GTATCGAATA CGCGCCCTGG
CGGGTCGTTC TTTCCCTGCT GATTGCCATT GCAGCCGCTG CGGCGGCGAT ATGGATAGCG
TTTCATCTTC GCCAGCAACG GCCCAAGGTG TATCTGGCAC GCGCGTGTGC GGCAGGGTTG
CTGGGTATGG CCATCGTCGG CATGCACTAC ACCGGTATGG CGGCGGCAAG CTTTGCCGAG
GGTAGTTACT GCGGTGCGCT GGCGGGCGGG CTGAGCAGCA ACGGTCTGGA CCGAATCGTG
CTGGTGGCCA GCCTGTCGGT GCTGAGTATC ACGCTGTTCT GCTGCATTCT CGATTCCCAC
CTCGAAACGC GTACGGCGGT GCTCGCCAAT TCGCTGGTGG AAGCCAATCA TGAGCTTACC
CATCGGGCGC TGCATGACAG CCTGACCGGT CTGCCGAACC GCACGTTGCT GACCGATCGC
ATCGAGCAGA CCATGAACAA GGTCCGCGAG AACGGCGGCT GCTTCGCGTT GATGTTCATG
GACCTTGATG GCTTCAAACC GGTGAACGAT GCATTCGGTC ATCACACCGG GGACCTGTTA
TTGCGTCAGG TCGCCTTGCG TCTTCGTCAG AACCTGCACC TGCATGACAC ACTGGCGCGA
GTCGGCGGCG ACGAGTTCGT TCTGCTGGTC GAGCTTCAGG ACCAGCAGGA TGCACTGGCT
GTCGCAACGC GGCAGGTCAA CGAGATCGGC AATCCCTTTA CCATCGGCGA GCATCAGTTG
CAGATATCTT TGAGCATCGG CATCTGCATT TATCCCGGCA ACGGCACCAC GCAACACGAA
CTGCTGGTCA ACGCCGACGC AGCGATGTAC CACACCAAGG CAGCCGGCAA GAACGGCTAC
AGCTTTTTTG ACGTGTCGAT GAACAGCAAC GCACGCAATC AGTTGCAACT GTCGCAGGAC
CTGCGTTCGG CCATCAAGCA CAAGCACTTC TGTCTCTACT ATCAGCCCAA ATTCGACGCC
CTGACCGGGC TGCCGGTCGG TGCGGAAGCG CTATTACGCT GGAATCACCC GACGCAGGGC
CTTCTGGGGC CTGACCTGTT CATTGCCCTG GCCGAGAAAA CCGGGCTGAT CATTCAAATC
GGCGAGTGGG TGTTGAACGA AGCCTGCCGG CAAATGCGCG AGTGGTACAC CCAGGGCTAT
CCGCACTGGC GCATTGCGGT CAACCTGTCG GCGTTGCAGT TCTGCCACAG CGGGCTGGTC
ACCGCGGTCG CCGATACATT GGCCCGGCAC CAACTCCCGG CCAACTGCCT GACCCTGGAG
ATCACCGAAA CCACCGCCAT GCATGACGCG GATGCGAGCC TGGCGGTGTT GCGAAGGCTT
TCGGAGATGG GCGTTGACCT GTCGATTGAC GACTTTGGCA CCGGTTATTC CAGCCTGATG
TACCTAAAGC GTCTGCCTGC CAATGAAATC AAGATCGATC GCGGTTTTGT CCGTGATCTG
GAGCACGATA CCGACGATGC CGCCATCGTC TCGGCTATCG TTGCCGTGGG CCAGGCATTG
AACCTGCGAA TCGTTGCCGA AGGGGTGGAA ACTGCTGTTC AACAGCGCTT TCTGACCCAT
CTGGGGTGCC ACTCCCTGCA AGGCTTTCTG CTGGGGCATC CGCTGCCTGC GCAACAGTTT
CTAGAGAATA TCCGCGCGGC GGAAGTCAAA GCTGTGCTGG ACGCATCAGT CACTGGTCAA
CTGGCGATCT GA
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| Protein sequence | MLIGSYTPSL VMISVLVAII ASYAALDLTG RIISAKGRAV YVWIAGGALA LGVGGWSTHF
IGMLAFVLPI DVAYDVPLTL LSLLIAVLSS GFALWLVTQP RLPALQLGLG ASLLGLGISA
MHYTGMAAMR MQPGIEYAPW RVVLSLLIAI AAAAAAIWIA FHLRQQRPKV YLARACAAGL
LGMAIVGMHY TGMAAASFAE GSYCGALAGG LSSNGLDRIV LVASLSVLSI TLFCCILDSH
LETRTAVLAN SLVEANHELT HRALHDSLTG LPNRTLLTDR IEQTMNKVRE NGGCFALMFM
DLDGFKPVND AFGHHTGDLL LRQVALRLRQ NLHLHDTLAR VGGDEFVLLV ELQDQQDALA
VATRQVNEIG NPFTIGEHQL QISLSIGICI YPGNGTTQHE LLVNADAAMY HTKAAGKNGY
SFFDVSMNSN ARNQLQLSQD LRSAIKHKHF CLYYQPKFDA LTGLPVGAEA LLRWNHPTQG
LLGPDLFIAL AEKTGLIIQI GEWVLNEACR QMREWYTQGY PHWRIAVNLS ALQFCHSGLV
TAVADTLARH QLPANCLTLE ITETTAMHDA DASLAVLRRL SEMGVDLSID DFGTGYSSLM
YLKRLPANEI KIDRGFVRDL EHDTDDAAIV SAIVAVGQAL NLRIVAEGVE TAVQQRFLTH
LGCHSLQGFL LGHPLPAQQF LENIRAAEVK AVLDASVTGQ LAI
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