| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2753 |
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| Symbol | |
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| ID | 1184407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3061677 |
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| End bp | 3063011 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637394122 |
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| Product | HlyD family secretion protein |
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| Protein accession | NP_792559 |
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| Protein GI | 28869940 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTCAGCC TTCTTAATGA AGCCCCACCT GTAATGGTTG ATTTATTCAT GCAATCGTCT
GGCTCCCGTA AATCCCGTCG CTGGTTGATC AGTGTGTTGA TCCTGTTGGT CATTGTCGCC
CTGTGTTGGT GGTTATGGCC TGCGTCCACG CTCGACAAAG GGGCCGAGAG CAAGCGGGCG
GGCGCCAGTG GCATGGGCCG GCCGGGCTTT GGTGCGTCGG CTATCGCCGT TCCGGTGCGT
GTTGCCCCGG CCACAGAAGG CGAATTTCCT ATTTTTTACA AGGCGCTCGG CACGGTCACG
GCGACCAATA CCATCAATGT GCGCAGCCGG GTGGCGGGTG AGCTGGTCAA GCTTTACTTC
CAGGAAGGCC AGAAGGTCAA GGCCGGTGAT CTGTTGGCGG AAATCGATCC GCGCAGCTAT
CAGGTCGCCT TGCAGCAGGC CGAGGGCACG CTGGCAACCA ATCAGGCGCT GCTCAAGAAT
GCCCAGCTCG ATGTGCAGCG TTATCGCGGT CTGTTTGCTG AAGACAGTAT CGCCAAACAG
ACGCTGGACA CCGCCGAGTC GCTGGTGAGC CAGTATCAGG GCACCATCAA GACTAATCAG
GCCGCCGTGG CTGACGCGAA ACTGAGCCTG GACTTCACGC GGATCCGAGC GCCTATTGCC
GGTCGCGTGG GCCTCAAACA ACTGGACGTC GGTAACCTGG TTGCCGCCAA TGACACCACT
GCGCTGGTGG TGATTACTCA GACCCAACCA ATCTCGGTTG CTTTCACGCT GCCGGAAAAA
GACCTGTCGG CGGTTATTTC CCGCTATCGC ACCGGTGACA AGCTACCCGT CGAAGCCTGG
GACCGTGGCG ACACGAAAAT GCAGGCGACC GGCGTTCTTG CCAGCCTCGA CAACCAGATC
GACGTGGCCA CCGGCACACT GAAATTCAAG GCCCGTTTCG AGAACAACGA CGAAATTCTG
TTCCCCAACC AGTTCGTCAA TGTGCGTCTG CGCGCCGATA CCCTGAAACA GGCGATTCTG
GTCCCGACTG CCGCTGTGCA GTTCGGCACT GACGGCACCT TTGTCTATGT GCTGGACGGC
GACAAGAAGG TCAAACTCAA ACTGCTGAAA ACCGGCCCGA GCGACGAGAC GTCTACGGTG
ATCACCGAAG GCCTGGCTGC CGGTGAGCGG GTCGTGCTTG AGGGCACTGA TCGTCTTCGT
GATGGTGCCG AAGTCGAGGT CGTCAACGAC AGCAAGGACG TACCGGCAGG TCCGGGGCAG
AAGTTGCAGG GCAAACCTGA CAGCAAGTCA GAAAAGTCGG CCGTACTTGG CAAGGTGGAA
AAACCAAACG TATGA
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| Protein sequence | MFSLLNEAPP VMVDLFMQSS GSRKSRRWLI SVLILLVIVA LCWWLWPAST LDKGAESKRA
GASGMGRPGF GASAIAVPVR VAPATEGEFP IFYKALGTVT ATNTINVRSR VAGELVKLYF
QEGQKVKAGD LLAEIDPRSY QVALQQAEGT LATNQALLKN AQLDVQRYRG LFAEDSIAKQ
TLDTAESLVS QYQGTIKTNQ AAVADAKLSL DFTRIRAPIA GRVGLKQLDV GNLVAANDTT
ALVVITQTQP ISVAFTLPEK DLSAVISRYR TGDKLPVEAW DRGDTKMQAT GVLASLDNQI
DVATGTLKFK ARFENNDEIL FPNQFVNVRL RADTLKQAIL VPTAAVQFGT DGTFVYVLDG
DKKVKLKLLK TGPSDETSTV ITEGLAAGER VVLEGTDRLR DGAEVEVVND SKDVPAGPGQ
KLQGKPDSKS EKSAVLGKVE KPNV
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