Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2699 |
Symbol | |
ID | 1184353 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2992163 |
End bp | 2994622 |
Gene Length | 2460 bp |
Protein Length | 819 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637394069 |
Product | GAF domain/GGDEF domain/EAL domain protein |
Protein accession | NP_792506 |
Protein GI | 28869887 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0182626 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCTCTATG AAATCAGCCT TCTGGCCAGT TCGACCCTTG ATCGCGGCGC ATTTTTACGG GGCATTCATG AGCAATTAGG TACGCTGATC GATGCCGAGA ACTTTTACGT GGCGCTTTAC GACCAGCAGA GCGGCAAGAT CACCTACCCA TATTACATCG ATCGGTTCGA CGACGAAGCG ATGGCGCACG AAGCGTTCGA GTTCATCAAT ACCGATCGAA TCTCGCTGAC CGGGTATGTC CTGAGCAGCG GGCAGCCCAT GTTTCTCAAT GCGTCCTGTA TCGAGCAGGC CAAGGTTGAC GGGCGTTTTT TCTGGGTGGG ACGTCTCCCC GAGTTCTGGA TGGGGGCGCC CTTGAAGAAC GCCTCGGATG AAGTGTTCGG CATGGTGGCG ATGCAGGTCT ACGACGTGTC CCGGGTCTAC AGCGCTCAGG ACCGCGCCTT GTTTGCCGTG GTGTCGCGGC ATGTGGCAAT GGCGCTGGAC CGCCTGTTGC GCCGCACGGA CCTGGAGCAG ATCGTGGCGC TGCGCACGCA ACAGCTGTCG GCCGCCAACG ACGCGTTGCG CCAGGAAGTG AAAGATCGCG AGCGCGCCGA GCACTTGCAA AGCGCCCTGT TCCAGATCGC TGCGCTGTCC AGCCAGCCCG GTGACATGAA CGAACTGTTT CGTAGCCTGC ACATGATTGT TGGTGAACTG CTGGTGGCGC TCAACTTCTA CATCGCGCTA TACGACGGCG CCACCGGCGA AGTGACCTTT CCTTACTACA TCGACGAACA CCAGCACACA CCACCGCGAT CACGGCGCGG GCAACGTGGC TTTACCGAAT ACGTGATCGG CCAGCGGCGG CCGTGCCTGA TCGATTACGA CGACGCCCGC AGGCTGGAGA GCCTCGGGGA AATCGAAGTG CAGAGAGACG CCGGTCGATC GTCCTCCTGG CTGGGCATTC CATTGTTCGA CAGCGGGCAG GTGCGTGGCG TACTGGTGGT GCAGAGTTAT TCCAAGGATG TCAGCTATAC CCTGCGCGAT CAGGAACTGC TGACCTTTGT GTCACGCCAT ATCGACACGG CGTTGTCCCG TCGCAGCGCC GCCGAAGCGA TTCACACCGC CAACGTACTG CTCGAGGCGC GGGTTCGTGA CCGTACCCGC GAGCTGGATC AGGCCAATGC CAGGCTGCAA CACGAAAACT CCCACGACTC GCTGACCGGT TTGCCCAACC GCAGTCAGTT GCAACATCGT CTGCGACAGG CATGGCAGGA CTTCTGCCGA AACGGCCGGC AACTGGTTGT CATGTTCATC GATCTGGATC GCTTCAAGAT GATCAACGAC AGCCTCGGCC ATCATTGCGG CGATATCCTG CTGATTCAGG CTGCCGAGCG ATTGCGCAGT TGCATGCGCG AAGAGGACCT GCTGGCCCGC CTGGGTGGCG ACGAATTTGC TGTGTTGAGC ATCGATACGC CGTTGCAGAC CGGCACGTGC ATCGCCCAGC GAATACTGAC GGCGTTCGAG CAGCCGTTCG TGATTGACGA CCATACGATT TTTTCTTCGT GCAGCATCGG TGTGGTGGGT GCCGACAGCC AGTTTCATCA AGAGCCGGCA GACCTGCTGC GCGATGCCGA TACGGCCATG TACCGAGTCA AGAATGGCGG CCGTGACAGC TTCGCAGTGT TCAATCAAGC GCTGCGCCGG GAGGTTTCGG ATCAGGTCGA GCAGGAAGGC GCGTTGCGCA CGGCTCTGAA ACGCACCGAT CAACTGATCC CTTATTTTCA GCCAGTGATC TGTGTCAACA CCGGTGACCT GCTGGCGCTG GAGGCGCTGA TTCGCTGGCG CATGCCCGAC GGGCGAATCA TCGCGCCGGA AAGTTTTTTG CCAGCGCTGG AGGGGCTTCG TCTGATTGGT CGTCTGGACC TTTACATGCT CAAGCGGGTC ATCACCATTC TCGCGCAACC CGAAAACGGC CATTGGCCGC CGGTGCATGT GAACTGCTCC AGTTACAGCA TCACCCGTCC GGCATTCGCC GCTGAAGTGC TGGCCATGCT CGCCGAGCAC AATGTCGCGC CCGGGCGTCT GTGTCTGGAG CTTACCGAAG GCGCGCTGGT GGCTGACCCG GAGCAGGCGC GCCTGTCCAT GAAACAATTG GCCGAGCAAG GTATGTCGGT GATGCTGGAC GATTTCGGCG CGGGGTTCTC TTCCCTCAGC TACGTGCATC AGTATCATTT CAGCGGTTTG AAGATCGACA AGTCATTTAT CTTCGGCCTG GCCTCCAGCG TGCGCAGCCG GGCGATCGTT CGCGCCATTG TGCGGATGGC CGAGTCACTT GACCTGACCG TGGTTGCCGA AGGCGTCGAA GACCTCGAAA CGCTGGAGCT GCTGCGCGAG ATTGGCGCGA CCCAGGCCCA GGGCTACTAC TTCTCGGCGC CCTTGCCGAT TGAGCAACTG GTGATCAGCG CGGGTCGTGC GGCAGGCTGA
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Protein sequence | MLYEISLLAS STLDRGAFLR GIHEQLGTLI DAENFYVALY DQQSGKITYP YYIDRFDDEA MAHEAFEFIN TDRISLTGYV LSSGQPMFLN ASCIEQAKVD GRFFWVGRLP EFWMGAPLKN ASDEVFGMVA MQVYDVSRVY SAQDRALFAV VSRHVAMALD RLLRRTDLEQ IVALRTQQLS AANDALRQEV KDRERAEHLQ SALFQIAALS SQPGDMNELF RSLHMIVGEL LVALNFYIAL YDGATGEVTF PYYIDEHQHT PPRSRRGQRG FTEYVIGQRR PCLIDYDDAR RLESLGEIEV QRDAGRSSSW LGIPLFDSGQ VRGVLVVQSY SKDVSYTLRD QELLTFVSRH IDTALSRRSA AEAIHTANVL LEARVRDRTR ELDQANARLQ HENSHDSLTG LPNRSQLQHR LRQAWQDFCR NGRQLVVMFI DLDRFKMIND SLGHHCGDIL LIQAAERLRS CMREEDLLAR LGGDEFAVLS IDTPLQTGTC IAQRILTAFE QPFVIDDHTI FSSCSIGVVG ADSQFHQEPA DLLRDADTAM YRVKNGGRDS FAVFNQALRR EVSDQVEQEG ALRTALKRTD QLIPYFQPVI CVNTGDLLAL EALIRWRMPD GRIIAPESFL PALEGLRLIG RLDLYMLKRV ITILAQPENG HWPPVHVNCS SYSITRPAFA AEVLAMLAEH NVAPGRLCLE LTEGALVADP EQARLSMKQL AEQGMSVMLD DFGAGFSSLS YVHQYHFSGL KIDKSFIFGL ASSVRSRAIV RAIVRMAESL DLTVVAEGVE DLETLELLRE IGATQAQGYY FSAPLPIEQL VISAGRAAG
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