Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2688 |
Symbol | |
ID | 1184340 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2982076 |
End bp | 2983230 |
Gene Length | 1155 bp |
Protein Length | 384 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637394056 |
Product | major facilitator family transporter |
Protein accession | NP_792495 |
Protein GI | 28869876 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTGTTGC CCATACTGCT GTTGTCGGCC GCCGGTTTCA CCGTGCTGAC CACAGAGTTC GTTATCGTCG GTCTTTTACC CGCCATTGCC CGCGACCTGG ACGTCTCGGT TTCGCAGGCC GGGCTGCTGC TGACGCTGTT TGCGTTCACC GTCGCAGCCT TTGGCCCGTT TCTGACCGCG TATTTTTCGC GCTTCGAGCG CAAGCGTCTG TTTATCAGCA TCCTCATCCT GTTCGGGCTG GCCAATGCGC TGGCTGCGTT GGCCCCTGAT ATTGCGGTGA TGGGCGTCGC GCGCTTGATT CCGGCGTTAG GCCTGCCGGT GTTCTGGGCG CTGGCCAGCG AAACCGCCGT GGACATCGTC GGACCGGAGT TCGCCGGGCG GGCGATTGCC CGCATCGGTT TCGGGATTGT CTGCGCCACG GTGTTCGGCA TCCCCGTTGG CACCCTGATT TCGGATGCGT TCGGCTGGCG CAGCGCGTTC TTCGTGCTGT CCGGGCTGGC GTTTGCCAAG GCGCTGTTGC TGGCGGTGTA TCTGCCAAGG ACGGCCGCAA AGAAAAACCC GGTTTCAATC CTCAAGCAAT TCGGCATTTT GCGCAGTCCG ATCATGCAGG GGCATGTGCT GCTGTCGGTT CTGGTGTTCA GCGGTATGTT CACGGCCTAT ACCTACCTGG CAGACATGCT CGAGCGGCTG GCCGGGTTCG ACGGCAATCT GGTGGGCTGG TGCCTGATGG GCTTTGGTGC GGTCGGTTTG CTCGGCAACT CGCTGGGCGG GCGCATGGTC GACCGGCATC CGTTGATGGC CAGTCTGGTG TTCTGCGCCT TCATGGTGGT CGGCATGACT GCCGTGGTGC CGAGCATTCA TTCGGTATTT GCCTTGCCAC TCGCGCTGGC GGTATGGGGC ATCACCCAGG CGGCGCTGTT TCTGGTCAGT CACGTGCGGC TGATCAAGGC CGCGCCCCAG GCGCCTGCGT TCGCTGCCTC GCTGAATATC GCCGGGGCGA ACCTGGGCAT CGGCATCGGA GCGTTCATCG GTGGCAGGGT CATTGATCAT CTGGGGCTGG GTAACGTCGG TTTCGCCGCT GCGGGCATCA TCGTTCTGGC CATTGTGCTG GCGCTTTTGC TGATCAAACG TGATCCCGGC CCGCTCGCTG CCTAG
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Protein sequence | MLLPILLLSA AGFTVLTTEF VIVGLLPAIA RDLDVSVSQA GLLLTLFAFT VAAFGPFLTA YFSRFERKRL FISILILFGL ANALAALAPD IAVMGVARLI PALGLPVFWA LASETAVDIV GPEFAGRAIA RIGFGIVCAT VFGIPVGTLI SDAFGWRSAF FVLSGLAFAK ALLLAVYLPR TAAKKNPVSI LKQFGILRSP IMQGHVLLSV LVFSGMFTAY TYLADMLERL AGFDGNLVGW CLMGFGAVGL LGNSLGGRMV DRHPLMASLV FCAFMVVGMT AVVPSIHSVF ALPLALAVWG ITQAALFLVS HVRLIKAAPQ APAFAASLNI AGANLGIGIG AFIGGRVIDH LGLGNVGFAA AGIIVLAIVL ALLLIKRDPG PLAA
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