Gene PSPTO_2678 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2678 
SymbolhopP1 
ID1184330 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2973945 
End bp2974919 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content60% 
IMG OID637394046 
Producttype III helper protein HopP1 
Protein accessionNP_792485 
Protein GI28869866 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.621143 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCATGG GTGTTTCACC TATTCGTAAC TCAAACTCCC TGCCGATCGA TTTTTCGTCG 
TTGAGCGCAA AGAGTGGCGG GCATAACGGG CTGGGCAGCG GAGACAATTC GACTATCGAC
CCGAGTACGT TGTTGTTCGG CAATCAAGGG CAGACGCAGG TCAATTTCGC TCCGCCCAAC
AGCACGGACT CCTCAACCAG CGGTGTGAAC GCTGCGTCAG GCAATACGGC GTCCGGCCTG
GTCGAGCAAA TCATGAGCCT GCTGAAACAA TTGATGCAGA TGCTGATGCA AAACAACAAT
GCTTCCGGTA ACCCTCAGAC TGATTCGTCA ACGCCAGGCG TCGGCAGTGG CAACAGCGTC
GGGAGCGGCG GTACTGGAAG CAGTCTCGCA GGCAGTGACG GTGGCGACGA AACGTCCGGT
GTCGGTAACG GCGGTTTAGG CGACGCGGGC AGCACGCCAA CAACGAGCGC GGCCGATGGT
GTGCCCTCGG ATACTTCACT CACGGGTAGC GGTGGGCTGC ATTTGCCTCA ACAGCTTGAG
CAGTATCGAG GCGACATTAT GGACGCCGCC AAAGCCACCG GCGTGCCGCC CAGCGTGATC
GCCGGGCAGA TATGGGCTGA GTCGCGCGGT CAGTTGAATG CGGCCACCAC CAATGTCAAC
GGCAAGGCCG ATGCGGGCCT GATGCAGGTC AACGCAGACA CGTTCAAGTC ATTGCAGCAG
CAAAACCCGG GGTTGCTGGG CAACGACGTC AACGATTCGC ACACCAACAT CATGGCGGGC
GCGCTCTACC TGCGAGACCA GAACAAGGAG TTCGGCGACA TGGGGGCAGC ACTTCGCGCA
TACAACTCCG GGCCCGACAA GGTCAATAAA GCCGACCTCA GCGACACGGG AGGCGTGGGC
GGCAGCAGCT ACCCGGCGGA CGTACTGAAC TTCGCGAAAA TCATCGAGAG TGGGCAGGGC
AATTTACCCG CTTGA
 
Protein sequence
MTMGVSPIRN SNSLPIDFSS LSAKSGGHNG LGSGDNSTID PSTLLFGNQG QTQVNFAPPN 
STDSSTSGVN AASGNTASGL VEQIMSLLKQ LMQMLMQNNN ASGNPQTDSS TPGVGSGNSV
GSGGTGSSLA GSDGGDETSG VGNGGLGDAG STPTTSAADG VPSDTSLTGS GGLHLPQQLE
QYRGDIMDAA KATGVPPSVI AGQIWAESRG QLNAATTNVN GKADAGLMQV NADTFKSLQQ
QNPGLLGNDV NDSHTNIMAG ALYLRDQNKE FGDMGAALRA YNSGPDKVNK ADLSDTGGVG
GSSYPADVLN FAKIIESGQG NLPA