| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2678 |
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| Symbol | hopP1 |
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| ID | 1184330 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2973945 |
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| End bp | 2974919 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637394046 |
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| Product | type III helper protein HopP1 |
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| Protein accession | NP_792485 |
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| Protein GI | 28869866 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.621143 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCATGG GTGTTTCACC TATTCGTAAC TCAAACTCCC TGCCGATCGA TTTTTCGTCG
TTGAGCGCAA AGAGTGGCGG GCATAACGGG CTGGGCAGCG GAGACAATTC GACTATCGAC
CCGAGTACGT TGTTGTTCGG CAATCAAGGG CAGACGCAGG TCAATTTCGC TCCGCCCAAC
AGCACGGACT CCTCAACCAG CGGTGTGAAC GCTGCGTCAG GCAATACGGC GTCCGGCCTG
GTCGAGCAAA TCATGAGCCT GCTGAAACAA TTGATGCAGA TGCTGATGCA AAACAACAAT
GCTTCCGGTA ACCCTCAGAC TGATTCGTCA ACGCCAGGCG TCGGCAGTGG CAACAGCGTC
GGGAGCGGCG GTACTGGAAG CAGTCTCGCA GGCAGTGACG GTGGCGACGA AACGTCCGGT
GTCGGTAACG GCGGTTTAGG CGACGCGGGC AGCACGCCAA CAACGAGCGC GGCCGATGGT
GTGCCCTCGG ATACTTCACT CACGGGTAGC GGTGGGCTGC ATTTGCCTCA ACAGCTTGAG
CAGTATCGAG GCGACATTAT GGACGCCGCC AAAGCCACCG GCGTGCCGCC CAGCGTGATC
GCCGGGCAGA TATGGGCTGA GTCGCGCGGT CAGTTGAATG CGGCCACCAC CAATGTCAAC
GGCAAGGCCG ATGCGGGCCT GATGCAGGTC AACGCAGACA CGTTCAAGTC ATTGCAGCAG
CAAAACCCGG GGTTGCTGGG CAACGACGTC AACGATTCGC ACACCAACAT CATGGCGGGC
GCGCTCTACC TGCGAGACCA GAACAAGGAG TTCGGCGACA TGGGGGCAGC ACTTCGCGCA
TACAACTCCG GGCCCGACAA GGTCAATAAA GCCGACCTCA GCGACACGGG AGGCGTGGGC
GGCAGCAGCT ACCCGGCGGA CGTACTGAAC TTCGCGAAAA TCATCGAGAG TGGGCAGGGC
AATTTACCCG CTTGA
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| Protein sequence | MTMGVSPIRN SNSLPIDFSS LSAKSGGHNG LGSGDNSTID PSTLLFGNQG QTQVNFAPPN
STDSSTSGVN AASGNTASGL VEQIMSLLKQ LMQMLMQNNN ASGNPQTDSS TPGVGSGNSV
GSGGTGSSLA GSDGGDETSG VGNGGLGDAG STPTTSAADG VPSDTSLTGS GGLHLPQQLE
QYRGDIMDAA KATGVPPSVI AGQIWAESRG QLNAATTNVN GKADAGLMQV NADTFKSLQQ
QNPGLLGNDV NDSHTNIMAG ALYLRDQNKE FGDMGAALRA YNSGPDKVNK ADLSDTGGVG
GSSYPADVLN FAKIIESGQG NLPA
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