Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2621 |
Symbol | polB |
ID | 1184273 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2911958 |
End bp | 2914321 |
Gene Length | 2364 bp |
Protein Length | 787 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637393991 |
Product | DNA polymerase II |
Protein accession | NP_792430 |
Protein GI | 28869811 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0417] DNA polymerase elongation subunit (family B) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00407821 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGAGTTAC AGCAGGGCTT TATCCTGAGT CGGCACTGGC AAGACACGCC CGCCGGGACA GAAGTCGACT TCTGGTTGGC CACTGATCAC GGTCCTCGCC ACATTCGTTT GCCTTGCCAG CCCTCTGTCG CTTTTATTCC TGCTGAGCAG GGTGAGCGCG CGCAGTCGTT GTTGCGTACC GAGCGTGGAG TCGATTTGCG CCCGCTGGAA CTCTGCGATT TCCGCCATCG ACCGGTGCTG GGGGTGTACT GCCAGCAGCA TCGACAGCTG ATGAACGTCG AAAAACTGCT GCGCAGAGGC AACGTGGACG TCTACGAAGC CGACATTCGC CCGCCTGAAC GCTACCTGAT GGAGCGCTTC ATCACCGCGC CCGTGCAGTT CGGCGGCACG CCCAATGCCG ATGGTGTGCT CTGTGACGCG CAGATAAGGC CGGCAGCGGA TTACCGGCCC AGGCTGAAAC TGGTGTCGCT GGACATCGAA ACCACGGCGC GGGGCGAGTT GTATTCCATT GCGCTGGAGG GCTGTGGCCA GCGCCAGGTG TATATGCTCG GCCCGGCCAA TGGTGGCGAC GAGGCGCTGG ATTTTCAGCT CGACTATTGC GACACCCGCG CGCAGTTGCT CGAGCGTCTG AACGACTGGC TGGCGCTGCA CGACCCCGAC GCGATCATTG GCTGGAACGT GGTGCAGTTC GACCTGCGGG TCTTGCACGA ACATGCTCAG CGCCTGCAGG TGCCGCTGCG GCTCGGGCGT GGCGGGGAAG CGATGGGCTG GCGTGAGCAT GGCAGCCGCA ACAACCACTT TTTCGCCGAA GTCAGCGGGC GGCTGATCAT TGACGGTATC GAGGCACTGC GCTCGGCGAC CTGGAGCTTT CCCTCGTTCA GCCTTGAGAA TGTCGCGCAA ACCTTGCTGG GCGAAGGCAA GGCCATCGAC ACGCCGTATC AGCGCATGGA CGAAATCAAC CGCATGTTCG CCGAGGATAA GCCGGCACTG GCACGTTACA ACATCAAGGA CTGCGAGTTG GTGACGCGTA TCTTCGCCAA GACCCAGTTG CTGACCTTTC TGCTTGAACG CGCCACCGTG ACCGGTTTGC CTGCCGACCG CAGCGGTGGC TCGGTGGCCG CCTTCTGCCA TTTGTATATT CCGCTGATGC ACCGTCAGGG CTTTGTCGCG CCCAATCAGG GCGAACGCTT GCCTGAAGCC AGCCCCGGTG GCTTTGTGAT GGATTCGCAG CCGGGGCTGT ATGAATCGGT GCTGGTGCTG GACTACAAAA GCCTTTATCC GGCAATCATC CGCACTTTTC TCATCGATCC GGTGGGCCTG ATCGAAGGCA TGCGCCAGCC TGGAGACAGC GAATCGGTGC CCGGTTTTCG CGGCGCACGC TTTTCTCGCA CGCGGCACAG CCTGCCGGCC ATCGTCGAGC GTGTCTGGCA GGGCCGGGAG GCAGCCAAAC GTGAGCACAA CGCGCCGCTG TCCCAGGCCC TTAAAATCAT CATGAACGCC TTTTATGGCG TGTTGGGGTC CAGCGGTTGC CGGTTTTTCG ATCCACGGCT GGCTTCGTCC ATCACCCTGC GCGGACATGA AATCATGCTC AAGACCCGCG ACCTGATTCA GGCGCAGGGC TACACCGTGA TTTACGGCGA CACTGACTCG ACCTTCGTCT GGCTGGGACG CCCGCACGGG CAGGAAGAAG CGGCAGGGAT CGGCAAAGCG CTGGTGCAGC AGGTCAATCA GTGGTGGCGC GAGCACTTGC AGAACGAATA TGGCCTGCAG AGCGCCCTTG AACTGCAGTA CGAAACACAT TTTCGACGTT TTCTGATGCC GACCGTGCGC GGCGCGGAAG AGGGCAGCAA GAAGCGCTAC GCCGGGCTGG TCACACGCGC CGACGGTGCT GAGGAAATGA TCTACAAAGG TCTGGAAACG GTGCGCACCG ACTGGTCGCC ACTGGCCCAG CGGTTTCAGC AGGAACTGTA CCTGCGCATT TTCAAGCGCC AGCCGTATCA GGATTATGTG CGTGATTACG TGCAGCGCAC CCTGTCAGGC GAGCTGGATG ATCTGCTGAT CTACCGTAAG CGCCTTCGAC GCAAGCTTGA TGACTACCAG CGCAACGTGC CGCCGCATGT GCGTGCTGCG CGTCTCGCCG ACGAGTACAA CGACCAGCAG GGCCGACCCC GGCAGTATCA GAGCGGCGGC TGGATCAGCT ACGTGATGAC CACCGTGGGG CCGGAACCGC TGGAAATTCG TCATGCGCCG ATTGACTACG ATCACTACGT GACGCGCCAG CTGCAACCGC TGGCCGATGC CATCCTGCCC TTTGTGGACG ATGATTTCAG CACGTTGATC GGTGGGCAGC TCGGGCTTTT TTAG
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Protein sequence | MELQQGFILS RHWQDTPAGT EVDFWLATDH GPRHIRLPCQ PSVAFIPAEQ GERAQSLLRT ERGVDLRPLE LCDFRHRPVL GVYCQQHRQL MNVEKLLRRG NVDVYEADIR PPERYLMERF ITAPVQFGGT PNADGVLCDA QIRPAADYRP RLKLVSLDIE TTARGELYSI ALEGCGQRQV YMLGPANGGD EALDFQLDYC DTRAQLLERL NDWLALHDPD AIIGWNVVQF DLRVLHEHAQ RLQVPLRLGR GGEAMGWREH GSRNNHFFAE VSGRLIIDGI EALRSATWSF PSFSLENVAQ TLLGEGKAID TPYQRMDEIN RMFAEDKPAL ARYNIKDCEL VTRIFAKTQL LTFLLERATV TGLPADRSGG SVAAFCHLYI PLMHRQGFVA PNQGERLPEA SPGGFVMDSQ PGLYESVLVL DYKSLYPAII RTFLIDPVGL IEGMRQPGDS ESVPGFRGAR FSRTRHSLPA IVERVWQGRE AAKREHNAPL SQALKIIMNA FYGVLGSSGC RFFDPRLASS ITLRGHEIML KTRDLIQAQG YTVIYGDTDS TFVWLGRPHG QEEAAGIGKA LVQQVNQWWR EHLQNEYGLQ SALELQYETH FRRFLMPTVR GAEEGSKKRY AGLVTRADGA EEMIYKGLET VRTDWSPLAQ RFQQELYLRI FKRQPYQDYV RDYVQRTLSG ELDDLLIYRK RLRRKLDDYQ RNVPPHVRAA RLADEYNDQQ GRPRQYQSGG WISYVMTTVG PEPLEIRHAP IDYDHYVTRQ LQPLADAILP FVDDDFSTLI GGQLGLF
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