Gene PSPTO_2608 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2608 
Symbol 
ID1184260 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp2900350 
End bp2900955 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content58% 
IMG OID637393978 
ProductSco1/SenC family protein 
Protein accessionNP_792417 
Protein GI28869798 
COG category[R] General function prediction only 
COG ID[COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.00462141 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGTACC GACCGACCCG CCGCGAGGTG GTCACAGGCC TCTCGTTGCT GAGCCTTGGC 
CTGCTGACTG GCTGCGGCAA TTCCAATGCC TTGCCGTTCA AGCATGGCAA GGACATGAGC 
AACGAGATTG TTGGCCGCAA CTTCCGGCTT AAGGATTCGC AAGGCAACGT CAAGACGCTT 
TCGAGTTTTC GCGGCCTGAT GCCGATGATT TTCTTCGGAT TTACCCAATG CCCGGCCATT 
TGCCCGACGG CGCTGGCGCG CGCAGCGCAG ATTAGAAAGC TGATGGGCGA GGAGGGCAAG 
ACGCTCCAGG TGGTGTTCAT CACTCTGGAC CCGGAGCGCG ATACGCCTGA TGTGATCGAC 
GCCTACGTAA AGGCTTTCGA TCCGACCTTC GTCGCCTTGT CCGGTACGCT TGAAGAAACC 
GTCGCGACGG CCAAGGAGTT CGGCGTGTTT TTCGAGAAAG TCCCGCTGGG CGATACCTAC 
ACGATTTCCC ACACCGCCAC CAGTTACGTC TACGACACCC GTGGCGTCCT GCGTCTGGGC 
TTGTCGCACA GACTGTCCGC CCCACAATGC ACCGAAGATC TGCTCACTTT GATGGAAGTA 
TGCTGA
 
Protein sequence
MTYRPTRREV VTGLSLLSLG LLTGCGNSNA LPFKHGKDMS NEIVGRNFRL KDSQGNVKTL 
SSFRGLMPMI FFGFTQCPAI CPTALARAAQ IRKLMGEEGK TLQVVFITLD PERDTPDVID 
AYVKAFDPTF VALSGTLEET VATAKEFGVF FEKVPLGDTY TISHTATSYV YDTRGVLRLG 
LSHRLSAPQC TEDLLTLMEV C