| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2602 |
|---|
| Symbol | |
|---|
| ID | 1184254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2884461 |
|---|
| End bp | 2890634 |
|---|
| Gene Length | 6174 bp |
|---|
| Protein Length | 2057 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637393972 |
|---|
| Product | yersiniabactin non-ribosomal peptide synthetase |
|---|
| Protein accession | NP_792411 |
|---|
| Protein GI | 28869792 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1020] Non-ribosomal peptide synthetase modules and related proteins
[COG3433] Aryl carrier domain |
|---|
| TIGRFAM ID | [TIGR01733] amino acid adenylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACACAT CGACCAGAAA AGCCTCGACT GCTCGCGGTA CGCCACCTCA AGCTTTCGAC
CCCGCCCTGC TGGGCGAGGA CATCGCCAGG CAACTGCGTC TGTCCCCGGA GCAGCTGGCG
GATGACGCCA ACCTGTTGAA GCTGGGCATG GACTCGATGC ACCTGATGGC CTGGCTCAAC
CGGTTTCGCC GTCTGGGTTT CAAAGTGACC CTCAGCGACC TCTATGACCA GCCGACACTG
CAGGGCTGGC AGCAACTGCT GAGCAGCGCG CCCGTTCAAG TCAACAGCGC CGAGGTCGCC
AGCAACGACG AGCCGCTTGC GCTCATGAGC GACGGCCAGC CGTTCGCCCT GACCAGTGTG
CAGCATGCTT ATCTAGTGGG GCGTTCCAGT GAACAGCCGC TGGGTGGCGT GGGTTGTCAT
CTTTATCAGG AATTCGACGG TCGCGGCCTG ACACCACAGG TGCTGGAAGC CGCCATCTAT
CAGTTGATCG AACGGCATCC GATGCTCAAG ACGCGCTTTC TGGCCGACGG CCGTCAACAG
TGGCAAGCGC ATTCGACCTG GCCGGGCCTC AAGGTTCATG ACCTGCGCGA TAGCGATGAC
ACGCTTCGCC AGCAGCGCCT GGGGGACCTG CGCGAACAGC TGGGCCATCG TCGCCTTGAC
GTCGAAAACG GCGAAACCTT CGACTTCCAG CTGTGCCTGT TGCCCGACGG TGGAAACCGG
CTGTTGGTCA ACATTGATCT GCTGGTTGCC GACGCAGCCA GCTTCAATCA GTTGTTCGAA
GAACTGATCG CGTTGATCGA AGACCGGCCG TTGCCGCCGT CGCCTGTCGA TTACGATTTC
TGCAGTTACC TGACGCAGGT AAGGCGCAAT GATCAGGCCC GCGTCGAGAA GGCCAAAGCC
TGGTGGCTGG CACGTCTGGA CGACCTGCCA CTGGCACCGA TTCTGCCGCT GGCGCAAGAC
CCTGAGCGCA TCGCGCAGGT TCGCATCAGC CGCCGTCGCG GACAACTGGA CGCAGCGCAA
TGGCAGGCAT TCAAGGACCA CGCCGGAACC GCTGGCGTTA CGCCGACCAT GGCGCTGGCC
ACGCTGTTCA GTGCAGTGCT GGGTCGCTGG AGCGGGCAAC AGTCGCTGCT GCTTAACCTC
ACCCTGTTTG ACCGCCAGCC GCTGAACCCG GCAGTCGCCA GCATGATCGC CGATTTCACC
AATATTCTCG CGTTGCCAGT GAGCTGCTGC GGGCAAGCCT TCGCAGAGTT GGCGCAAGCC
AATCAGCAGT CGTTTGCCGA AGTTCACGAA CACAGTGCGT GGTCGGGGGT CGAGGTGCTG
CGCGAATTGA AGAAACGCCA GCGCCACCCG CACGGTGCGC CGCTGGTGTT CACCAGCAAT
CTGGGCCGCC CGCTGTTTGG CGAAGCCGCA GAGAACACGC TGGGCGCACC CGGCTGGGGC
ATTTCCCAGA CGCCGCAGGT GTGGATCGAC CACCTGGCGT TCGAGCATCA GGGGCAGGTC
TATCTGCAGT GGGACAGCAA TAACCAGTTG TTCCCCGAGG GGCTGACCGA CACCTTGTTC
GACGTCTATT TCGAACACGT GCTGGCGCTG GTCGCAGACC CCGCGCACTG GTCACACCCC
TTGCCCGACC TGATGCCTTC CGCCCAGCGA GCCGTCCGCG AACAGGTCAA TGCCACCGCC
CGGGCCATTC CTGACGGGCT GCTGCACGAC GCCGTTTTCC TCCAGGCCGA ACGCACCCCG
CAAGCCACCG CACTGATTCA GGACCAGCGC CGTCTGAGCT TCGCCCAACT GGCCGATCAG
GCCAGTCGCC TGGCCGGCTG CCTGCAAGCC CTGGGTGTCA CAGCGGGCGA CACCGTGGCG
GTCAGCATGA CCAAGGACAT CGGCCAGATT GTCAGTGTGC TGGGCATTCT CAAGGCTGGT
GCGATCTATG TGCCCGTACC GCCGGACCAG CCATTGGCGC GGCGTATCGG CATTTATCAG
GGTGCGCAGG TGAAATGCGT GCTGACCAGC GCCGATGAGC CTGAAGAGCA CGACATCGGC
ACGGTCCTGA CCTGGCAGCA GGCAATCCTC AGCGAACCGC TTCAGCACCA GGTCCCGGTC
AGCGCACAGC AACCGGCCTA TATCATCTAC ACCTCAGGCT CGACCGGTGA ACCCAAGGGC
GTGGTGATCA GCCATCAAAG CGCCTTGAAC ACCTGCGTGG ACATCAGCCA GCGCCACGCC
GTGAGCCCCG AAGATCGTGT GCTGGCGCTG TCGGCGCTGC ATTTTGACCT GTCGGTGTAT
GACATCTTCG GAGTGCTCGG CGCAGGCGCT TCGCTGGTGC TGGTCAACGA CCGGCAACGT
CGCGACCCGG CGCTGTGGTG CAGGCTGATC GATGAACACG GCATTACCCT ATGGAACAGC
GTACCTGCCC TGCTGGACAT GTTGCTGACC TACAGCGAAG GCTTTGATCT GCACAGCCCG
GCGAGCCTGA GGCTGGTGAT GCTGTCCGGC GACTGGATCG GCCTGGACCT GCCGGGGCGC
TATCACCAGT ACCGCAGCGA TGGTCGGTTT GTCGCCATGG GCGGTGCGAC GGAAGCGGCC
ATCTGGTCCA ACACCTGCAC CGTGAGCCGG GTTGAGCCGC ACTGGCGCTC GATCCCCTAC
GGCACGCCGC TGACCAACCA GCGTTATCGC GTGGTTGACG AAACAGGACG CGATTGCCCG
GACTGGGTCG CCGGCGAGCT GTGGATCGGC GGCGCAGGTG TTGCACACGG CTATTTCAAC
GATGCCGAAC GCAGCGCCCG GCAGTTCGTC GAAGTGGCCG GTGAACGCTG GTATCGCACC
GGCGACATGG GCTGTTACTG GCCGGACGGA ACGCTGGAAT TCCTCGGCCG TCGTGACAAG
CAGGTCAAGG TCGGTGGCTA CCGCATCGAA CTGGGTGAAA TCGACGCAGC CTTGAACCGC
CTGGAAGGTG TCAAGGCAGC CATCAGCATG GCACCGGGCG AACGGGAAAA AAGCCTGGTG
GCTTTTGTCG TGCCGCACGG TTCCAGCCTG TGCAGCCGCG TCGAAGCCGA CCCGTGCACA
CCCGCCAGTT ACGCCGACTG GCTGACGCCT GTCACTGTCG CGACTGACAC AACAGACGGT
CTGCTGGCCG ATTTCCTGCT TGAGCATCTG GCGTTCAACG GCATACCGTT CAGCCCCTCT
CTGACGACCG ACCAGGTGTT ACAGACCTAC GGCAGCGAGG CGCGCTGGCA CCCGCTTCTG
ACGCGCTGGC TGGAGTGGCT CGCAACACAG GATCGCCTGT GCTGCGACGT CGAGGGCGCG
TGGCATCTCA ATCATTCGAG CACAAAGGCC ACGTCGCACG ACGTTGCTTG CGATGCACTG
ACACACGCCC TGCAGGCGCA CCACGACGCC CTGCGCGACA TACTGTCAGG CAAGCGCAGC
CCTCAGACCC TGCTTGAGCA TCCGTACTGG GCTCCAGAAC AGCTGCTGAT GCACGCACCC
GGCAGCCGCG AAACGCTCAG TGCACTTGCG ACATCGCTGG CGGACCTGAG CAAGCGCTTG
CAACGCCCGG TGCGCCTGAT CGAAGCCGGT GCCCGCAGCG CTGTCACCGG GGCATTTCTG
CTGGGGCGAC TTGACGCAGA GCAGTTGCAC TACACCGCCC TCGATACGTC ACAGGCAATG
GTCCTCAAGG CCCGCGAACG CCTCGCAGGT TTTATTCATG GCAGTGCACG CCGCGACACC
GACAGCGAGC GCCAGGCGCT TGTTCACAGT GCCGACGTGC TGCTGATCAA CAATCAATTA
CATCGTCTGG ATATGCCGCA AGCAGCCTTA CAGCAGTGGA CGCCACTCTG CGCGCCAGGC
GCTGCGGTCT ATGTGCTGGA GCTGGCGCAA GCCTCGGCGC TGGCACTGGT CAGCGCCGAG
TTGCTCAACG AAGGCCGCAG TGCAGCCGAA CAATTGCGTA ACAGCGAACA CTGGACGGCG
CTGCTGATGC AGGCCGGGCT TGGCGCCCCT GAAACGGATC GATCGGGCGC CCTGCAACGC
CTGATCCTGC GCGCGCCCGA TGTGCTGCAG CGCCCCGACT CTGCCCGGCT TGCCAAGGCG
CTGGCCAACG AACTGCCCGG CTACATGATT CCGCAGCGCC TGTATTTTCT CGACGCACTG
CCGTTGACCG CCAACGGCAA GATCGATCAT CAGGCACTGA TGCAGCGGTG CAAACCTGCC
GCCACACAAG CCGACCAATG CCAGCCCCCT GAAAACGTCC GCGAACAGGT TCTCGCACAG
CTCTGGCAGG AGTTGCTGCA AAGCGGCGCG GTGCACCGCC ACAGCCAGTT CTTCCAGCTT
GGCGGCGACA GCCTGCTGGC AACCCGCCTG ATCGGCGAAC TGGCCGGACG TGGCTATCAC
GCCCGGCTCG ACGACCTTTT CAACTTCCCG AGCCTGCACG CCTTCGCGGC GACGCTGGTG
GAGCACAATG CTCCGGCAAC CGTGCGGCTT GAACACGACC CGGCGGGTCG TTATCAGCCC
TTTGCCCTGA GTGAAGTGCA GCAGGCTTAT CTGGTCGGGC GTCAGCCAGG ATTCGTACTG
AGCGGCGTGG GCGCGCATTT CTTTGTCGAG TTCAGCGTCG AACGACTTAA TGTCCAGTTG
TTTCAAAACG CCTGGCAGCG CCTCATCGAA CGTCACGACA TTCTGCGTGC TGTGGTCCGT
GACGGCATGC TGCAGGTCCT GAAACAGGTC CAGGCCTTCA TTCCCCGGCG GCATCGGGTG
GCCACGCTGG AGGGCAGCGA AGCCCATGCA CTGCGCGAAC GGCTTTCCCA TCAGGTGCTC
GATGCCGGGC AATGGCCACT GTTCGATGCG CAGATCGTCG AAGATGGCAG CCCGCACAGC
CGCATTTTCG TCAGCCTCGA CAACCTGCTG CTCGACGGCA TGAGCATGCA AATACTGTTG
GCCGAACTTG AGACGCTGTA CCTGCACCCC GAACAGACGC TGGAACCGAT CGCTATCGGC
TTTCGCGACT ACCAGTGCCT GCGCGCCAGC CAGCCGCCCT CGCCCGGCGC TCGGGCGTAC
TGGCAGCGGC GTATCGACAA CCTGCCGCCA GCACCGCGCC TGCCACTGCG CTGCGCCCCA
GCCGACGTCG GCATACCACG CTTTGTGCGC CTGGCCGAGC GTCTGCCAGC AGACCGTTGG
GAGCGTTTGA AAGCCCAGGC CAATCAGCGC CAGTTGACGC CCTCAGGGCT ACTGCTCAGC
GCTTTTTCCG CCGTGCTGTC GGCCTGGAGC AGCGCGCCGG AGCTGACCCT CAACCTGACC
TTGTTTGACC GTCAGCCGCT GCACACGCAT ATCGACCGGG TGATGGGCGA TTTCACCTCG
CTGCTGCTGC TGGCCTGGCA CCCCACCGCT GACTGGCTTG GCAGTGCGCA AAATCTACAG
CAGCGGCTAT GGCGCGATCT GGCCCAGCGC GATCACTCGG CGATCCGGGT CATGCGTGAA
CTGGCCAGCC GCCATGGCCT GGCTGCCGCG CAGATGCCGG TGGTCTTCAC CAGTGCGCTG
GGGTTCGACA AGGGCCGCTT CATGGCCCAA TCGTCATGGC TCAAACCGGT CTGGGGCATC
TCGCAGACGC CGCAGGTCTG GCTGGATCAT CAGGTGTATG AGTCCGAAGG TGACCTGTGC
CTTAACTGGG ACGCGGTCGA GGCGCTGTTC GATCCCGACG TGTTGCGCGC CATGTTCGAC
CAGTACGTCA GCCTGCTGGA ACGGCTGGCC GAAGACCCGC AGGCTTGGGG ATTGTCCCTG
GCGCAACTGG TTCCCCACGG ACATCCTGGC GCTGACGTGG CTCCGTTGCC TCGCCCGCAA
CCGCTGCCAT TACCACTGCC GCACGAGCCC GAACAACAGG CCGATGAACA GCTCGTCGAC
CAGATCCGGC ATGCCTTTCA TGAGGTGGTC GGCCTGAAAC TGCAGGACTG TCGGCAGAAC
TTCTTCGACG CAGGCGCCAG TTCGTTGAAA CTGGTGCAGT TGCACGTGAA GCTGACCCAG
CAGGGCCATC GGCAGTTGCA GGCCACTGAC CTGTTCGGCT ACCCGAATGC CCGCGCACTG
GCGCGGCACT TGAGCCAGAC GCAACCGGCA AACGACACGC GGGACCAACC CCGACAGGCG
CAACTGACGC AAAGAAACGC CAGAAGATTA CGGCGCAACG GAGGTGGCTC ATGA
|
|---|
| Protein sequence | MYTSTRKAST ARGTPPQAFD PALLGEDIAR QLRLSPEQLA DDANLLKLGM DSMHLMAWLN
RFRRLGFKVT LSDLYDQPTL QGWQQLLSSA PVQVNSAEVA SNDEPLALMS DGQPFALTSV
QHAYLVGRSS EQPLGGVGCH LYQEFDGRGL TPQVLEAAIY QLIERHPMLK TRFLADGRQQ
WQAHSTWPGL KVHDLRDSDD TLRQQRLGDL REQLGHRRLD VENGETFDFQ LCLLPDGGNR
LLVNIDLLVA DAASFNQLFE ELIALIEDRP LPPSPVDYDF CSYLTQVRRN DQARVEKAKA
WWLARLDDLP LAPILPLAQD PERIAQVRIS RRRGQLDAAQ WQAFKDHAGT AGVTPTMALA
TLFSAVLGRW SGQQSLLLNL TLFDRQPLNP AVASMIADFT NILALPVSCC GQAFAELAQA
NQQSFAEVHE HSAWSGVEVL RELKKRQRHP HGAPLVFTSN LGRPLFGEAA ENTLGAPGWG
ISQTPQVWID HLAFEHQGQV YLQWDSNNQL FPEGLTDTLF DVYFEHVLAL VADPAHWSHP
LPDLMPSAQR AVREQVNATA RAIPDGLLHD AVFLQAERTP QATALIQDQR RLSFAQLADQ
ASRLAGCLQA LGVTAGDTVA VSMTKDIGQI VSVLGILKAG AIYVPVPPDQ PLARRIGIYQ
GAQVKCVLTS ADEPEEHDIG TVLTWQQAIL SEPLQHQVPV SAQQPAYIIY TSGSTGEPKG
VVISHQSALN TCVDISQRHA VSPEDRVLAL SALHFDLSVY DIFGVLGAGA SLVLVNDRQR
RDPALWCRLI DEHGITLWNS VPALLDMLLT YSEGFDLHSP ASLRLVMLSG DWIGLDLPGR
YHQYRSDGRF VAMGGATEAA IWSNTCTVSR VEPHWRSIPY GTPLTNQRYR VVDETGRDCP
DWVAGELWIG GAGVAHGYFN DAERSARQFV EVAGERWYRT GDMGCYWPDG TLEFLGRRDK
QVKVGGYRIE LGEIDAALNR LEGVKAAISM APGEREKSLV AFVVPHGSSL CSRVEADPCT
PASYADWLTP VTVATDTTDG LLADFLLEHL AFNGIPFSPS LTTDQVLQTY GSEARWHPLL
TRWLEWLATQ DRLCCDVEGA WHLNHSSTKA TSHDVACDAL THALQAHHDA LRDILSGKRS
PQTLLEHPYW APEQLLMHAP GSRETLSALA TSLADLSKRL QRPVRLIEAG ARSAVTGAFL
LGRLDAEQLH YTALDTSQAM VLKARERLAG FIHGSARRDT DSERQALVHS ADVLLINNQL
HRLDMPQAAL QQWTPLCAPG AAVYVLELAQ ASALALVSAE LLNEGRSAAE QLRNSEHWTA
LLMQAGLGAP ETDRSGALQR LILRAPDVLQ RPDSARLAKA LANELPGYMI PQRLYFLDAL
PLTANGKIDH QALMQRCKPA ATQADQCQPP ENVREQVLAQ LWQELLQSGA VHRHSQFFQL
GGDSLLATRL IGELAGRGYH ARLDDLFNFP SLHAFAATLV EHNAPATVRL EHDPAGRYQP
FALSEVQQAY LVGRQPGFVL SGVGAHFFVE FSVERLNVQL FQNAWQRLIE RHDILRAVVR
DGMLQVLKQV QAFIPRRHRV ATLEGSEAHA LRERLSHQVL DAGQWPLFDA QIVEDGSPHS
RIFVSLDNLL LDGMSMQILL AELETLYLHP EQTLEPIAIG FRDYQCLRAS QPPSPGARAY
WQRRIDNLPP APRLPLRCAP ADVGIPRFVR LAERLPADRW ERLKAQANQR QLTPSGLLLS
AFSAVLSAWS SAPELTLNLT LFDRQPLHTH IDRVMGDFTS LLLLAWHPTA DWLGSAQNLQ
QRLWRDLAQR DHSAIRVMRE LASRHGLAAA QMPVVFTSAL GFDKGRFMAQ SSWLKPVWGI
SQTPQVWLDH QVYESEGDLC LNWDAVEALF DPDVLRAMFD QYVSLLERLA EDPQAWGLSL
AQLVPHGHPG ADVAPLPRPQ PLPLPLPHEP EQQADEQLVD QIRHAFHEVV GLKLQDCRQN
FFDAGASSLK LVQLHVKLTQ QGHRQLQATD LFGYPNARAL ARHLSQTQPA NDTRDQPRQA
QLTQRNARRL RRNGGGS
|
|---|
| |