| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2591 |
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| Symbol | |
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| ID | 1184243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2861816 |
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| End bp | 2863402 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637393961 |
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| Product | GGDEF domain protein |
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| Protein accession | NP_792400 |
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| Protein GI | 28869781 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.200767 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAACGCG ACCTTCGGCT TGCGTCATGG CTGATCTTCG TAGTGTGCGC CTGCGTGGTG
ATGTTGATGG TCTGGCAGGC ATGGACCGCG CGCCGCAACA CGATGGATAA CATCCAGACC
AGCACGGTGA ATCTGGCTGC GGCGCTGAGC ACTTACACAG ACGGTATCTT CAAACAGAGC
GAGCTGATGC TTATCGGCCT GACAGAGCGT GTCGAAAAGG ACGGCACCGG GCCTGCACAG
GTGGAACGTC TGAGGTCGGT GATTGCCCGT GAAATGGGCG CGCTGCCGCA GATCGATACG
GTTTCGTTGT ACAACGTCGA AGGGATTTGC ATCTTTTCGA CCAACCCCAA GGCGGTGGGC
GTCAACAGTG TCAAACGCGA GTTTTTCCAG CACCACCTGC AGACGCCTGG CCGCGCGCCT
TACATCGGGC CGACCATTCG CAGTCGTGCC TCTGGCGAGT GGGTGATATC GGTCAGTCGG
CCTATCAATC ATCCTGACTC GAGTTTTGCC GGGTTGATGG TGGTGACCAT CGGTGTCGAG
CATCTGCTGA AGTTCTACTC AGGCATTCAG GTTGGAGACA CCGGCATCAT CAGCCTGACA
TCGGCGGCTG GGCAGTTGCG TGTGCGCTAT CCCCATCTTG AGGCGGAAAT CGGGCGCGAC
TTGTCATCGA CGCCGATTTT CACGTCCGAA CGTGACAAAC CCTCCGGCAC CACCCGGTTC
GTCTCCAGAA TCGACGGTAT CCCGCGCTTT TATGCGTTCA AACGCAGCGA GGTCTACCCG
ATTGTGACCG TCGTCGCGCT GGGTCAGAGG GAGGCCATGC TGGACTGGCT GGGGCAGACC
AAACAGTCGG TGCTGGTCAT GCTGGTGCTG CTCGGGCTGG TGATCGGGCT TGGCGTTCGC
CTGATCAAGC ACATACACAG CCGTATACGT GCAGAGGATC AGTTGCTGGA ATCCCAGGCA
GCCCTCATTC AGTTGAACCA GCATCTGGAG TTCATTGCCT CGGAAGACAA GCTTACCGGG
CTGGCCAATC GCAGACGTTT CGATCAGTTT CTGGATGTCG AATTCAAACG CGCCCGACGC
GAGCGCAACA TGCTGTCATT GATCCTGATG GATGCCGATC ATTTCAAGCG TTACAACGAC
CATTTCGGTC ATCTGGCCGG TGACGAATGC CTGGTGGCGC TCGCTCGGCT GGTCGAGCAA
TGCATCCGTC GCCCCGGCGA TGTTGCTGCT CGTTATGGCG GTGAGGAGAT TGCCGTCGTG
TTGCCTGGCA CTGACGAGGC GAGCGCTCGG CAAGTCGCCG AGAATATCCT GCAGGCCATT
CGTGACGAGC AGATCACGCA CCCCGCCAGC CCGTTCGGCA TCGTGACGGT CAGCCTGGGC
GTTGCAACGG TCGTTGGCAG TAACCGCCAG ATCAGCCAGC GAGGCCTGAT CGAGCTGGCC
GACCGCGCGC TGTACGCGGC CAAGTCGCAG GGCCGCAACC GGGTGAATGT GGCGTCGGAA
ATCGCCTTCA ACACGGTCCC GGCCTGGACG CAGGTCAATA CCTCTGTTGA CCCGCCCTAC
GGGCCGACGG CGGACACGCG GGATTGA
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| Protein sequence | MKRDLRLASW LIFVVCACVV MLMVWQAWTA RRNTMDNIQT STVNLAAALS TYTDGIFKQS
ELMLIGLTER VEKDGTGPAQ VERLRSVIAR EMGALPQIDT VSLYNVEGIC IFSTNPKAVG
VNSVKREFFQ HHLQTPGRAP YIGPTIRSRA SGEWVISVSR PINHPDSSFA GLMVVTIGVE
HLLKFYSGIQ VGDTGIISLT SAAGQLRVRY PHLEAEIGRD LSSTPIFTSE RDKPSGTTRF
VSRIDGIPRF YAFKRSEVYP IVTVVALGQR EAMLDWLGQT KQSVLVMLVL LGLVIGLGVR
LIKHIHSRIR AEDQLLESQA ALIQLNQHLE FIASEDKLTG LANRRRFDQF LDVEFKRARR
ERNMLSLILM DADHFKRYND HFGHLAGDEC LVALARLVEQ CIRRPGDVAA RYGGEEIAVV
LPGTDEASAR QVAENILQAI RDEQITHPAS PFGIVTVSLG VATVVGSNRQ ISQRGLIELA
DRALYAAKSQ GRNRVNVASE IAFNTVPAWT QVNTSVDPPY GPTADTRD
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