| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2586 |
|---|
| Symbol | amt-2 |
|---|
| ID | 1184238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2856588 |
|---|
| End bp | 2857913 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637393956 |
|---|
| Product | ammonium transporter |
|---|
| Protein accession | NP_792395 |
|---|
| Protein GI | 28869776 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0004] Ammonia permease |
|---|
| TIGRFAM ID | [TIGR00836] ammonium transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0516487 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCAATC GTCTACACGG CAAATCCCTA CTGGCTTTAC TGACTCTCAG TGCCTTGGCG
CCCTGGGCGC AGGCGGCCGA AACGCCAGTC CTGAACACCG GCAGCACCGC ATGGATGATC
ACCGCAGCAG TCCTGGTGCT GTTCATGTGC CTTCCGGGGC TGGCACTGTT CTACGGCGGA
CTGGTGCGGG CCAAAAACAT GCTCTCGCTG TTCACGCAGT GTTTTGGCAT CGCCGGTGTA
GTCGGCGTGC TATGGGTGAT CTACGGCTAC AGCATGGTGG TTGACACCAG CAACATGGTC
GAAGGGCAGG TAACGTTCAA CAGCTTCGTC GGTGGCCTGA GTCGCGCCTT TCTGGCGGGC
ATGACCCCCG ATAGCCTGGT CGGTGAAATC CCGGAAGGCG TGTTCGTGAC CTTCCAGATG
ACCTTCGCCA TCATCACGCC TGCACTGATT GCCGGAGCCT TTGCCGAGCG CATGAAATTC
TCTGCCGCGC TGCTGTTCAT GGCGCTCTGG TTCACCTTGG TGTATGCGCC GGTCGCGCAC
ATGGTCTGGG GCGGGGCGGG TGCGTTGATG CACAACTGGG GCGTGCTGGA TTTTGCCGGT
GGCACTGCGG TGCACATCAA TGCCGGTGTT GCAGCATTGG CAGCCTGTCT GGTGCTGGGC
AAACGCAAGG GTTATCAGAA CACACCCATG CCGGCTCATA ATCTGAGCCT GACCATGGCC
GGCGCGGCGA TGCTCTGGGT CGGCTGGTTC GGCTTCAACA TCGGCTCTGG CGGCGGCCTG
AGCGGCACTT CCGGCATCGT CATGCTTAAC ACCCAAGTGG GTGCCTGCGC CGGGATTCTC
GGCTGGATGT TCACCGAATG GTTCAAGGTC GGCAAACCGA GTGCACTGGG CCTGGCCAGT
GGTGCGCTGG CCGGTCTGGT CGGCATCACG CCTGCCTGTG CTTACGTCGG CGTCGGCGGC
GCGTTGGCGA TTGGTGTCCT GTGCGGAGTG TTCTGCTACC TGAGCGTGAC CGTCCTGAAA
AAACGCCTGG GCTACGACGA CAGCCTCGAT GTCTTCGGCC TGCACGGCAT CGGCGGCATG
ATCGGCGCGG TACTCACCGG CGTCTTCTGC GTACCGGCAC TGGGCGGGCT GGTGCCAGAG
GTGACCATGG GTGCGCAAGT CATTGCACAG GTCAAAGGCG TGCTCTTCAC CACCGTGTAT
TGCTTTGCGG TCAGCTGGAT CATCCTCAAA GCAGTCAACG CACTGATCGG CCTGCGGGCT
CACGAGTCAG TAGAAGAGAT GGGCCTGGAC CTGGCCGAGC ATAATGAGCG GGCTTACAAC
CACTGA
|
|---|
| Protein sequence | MVNRLHGKSL LALLTLSALA PWAQAAETPV LNTGSTAWMI TAAVLVLFMC LPGLALFYGG
LVRAKNMLSL FTQCFGIAGV VGVLWVIYGY SMVVDTSNMV EGQVTFNSFV GGLSRAFLAG
MTPDSLVGEI PEGVFVTFQM TFAIITPALI AGAFAERMKF SAALLFMALW FTLVYAPVAH
MVWGGAGALM HNWGVLDFAG GTAVHINAGV AALAACLVLG KRKGYQNTPM PAHNLSLTMA
GAAMLWVGWF GFNIGSGGGL SGTSGIVMLN TQVGACAGIL GWMFTEWFKV GKPSALGLAS
GALAGLVGIT PACAYVGVGG ALAIGVLCGV FCYLSVTVLK KRLGYDDSLD VFGLHGIGGM
IGAVLTGVFC VPALGGLVPE VTMGAQVIAQ VKGVLFTTVY CFAVSWIILK AVNALIGLRA
HESVEEMGLD LAEHNERAYN H
|
|---|
| |