Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2554 |
Symbol | |
ID | 1184206 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2820042 |
End bp | 2823548 |
Gene Length | 3507 bp |
Protein Length | 1168 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637393925 |
Product | hypothetical protein |
Protein accession | NP_792364 |
Protein GI | 28869745 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.024238 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATCCC TCTTTAAAAA GCTCATTGAA GTGTTGTGTA AAACCTGGGT CTGGTCACTG TTGCTGGTGT TTTTGTTGGC GGCATCGATA TGGAGTTTTG GTCCGCTGCT GGCGGTGTCG GATAACAGGT TCTGGGAAGG CACCAGCGCA CGGTTGATAA CAATCAGTGT GTTGTTTCTG GTGTGGGGGC TGGGGATGGT CTTTACCAAC TGGCGCGGTA GCCTGATCAA AAGGCAGGCC GAGGAAAGTG AGACGGGCAA AGAGTGCCTG CGCAAGTCGG TTGTGATGGA AAAGGAGCGC CTGGAACTTG CCAGTCGCTT CACGGATGCC CAGCGCGTCC TCAAGGATTC CGCTCTGTTT GGAGAACTGG GCGCTCGCGG CCGCAAGGAG CTGCCCTGGT ATGTATTGAT CGGCCCTCAG GGCAGTGGCA AGACCAGTCT GCTGGATTTT TCCGGGCTCG ATTTCCCCCT CGACAGACCG GCTCGCAAAC TGACTCGCGA TACGAGCAGT ACCGGCAGTT GCGACTGGTA CTTCACACAC CAGGCGATCC TTCTGGACAC ATCGGGCCGC TATTTCGATC AGCCTGATCC CCAAGTGGAC GGCGGCGCAT GGATGACGCT GTTGGGGCTG TTACAGGGAC GTCTGCGAAC GCAGCCGCTC AGCGGTGTGC TGGTGACATT GCCGGTGGAT ATTCTTCTTG ATGGCCTGGA CAAGCGTCTG GAGAAAGTCG CTGGAGATGT ACGTGTTCGT CTGGACGAGA TCTTTCGCCG GTTGCACGTT GATGTTCCGG TTTACCTGGT GCTGACCAAA GCAGACTCGA TAGCGGGTTT CGATGATTTC TTTGATCAAT TGTCTCGCGA GGAAAGTGAG CAGGTCCTTG GGACAACGTT CAAAAAAGGG CAGCGAGGCA CCGATGTCGA CGTCATCAGT CAGGCGTTCG AGACCTTGCT ACAGCGCCTG GGCAGTCAGG TCATAACTCG TATTCATCAG GAGCGCGACA GCCAGCGTCG GGGGAGAATG CTCGAGTTTC CCAATCAGCT TGGGGGCATC GGACGCCGGC TGAATATTTT TGCCGAGTTG GCGTTTTCCG GGAACCGCTA TCAGCGAGCC AGTCAATTGC GTGGCTTTTA CCTGACCCGT GCACCCCACG TCATGCAGCA GGGCGGTCAA CAACCTGAGC CTGAAACCGG TGCGGGTCTT CCTGTGCAAC ACGGTGGCCG CGCACGGTTT ATTCATGATC TGTTACGTCA TGTCATTTTT CCTGAGTCCG ATCTGGCCAT GCTCGGCAAA GAAGCCCGGA AGAAAATCCA GTGGCGGCAA AAGGGCATGT ATTGTGCAGC GCTGCTATTT CTGGCGGTGT CTGGTGCGCT CTGGGCGACC GGCTTCAATG CTAACCACGA CAGGCTGGAA AAGCTTCGCA CACTGGGTGA GCAGTGGACG CGGCAGACGT CATCGCTCAC CGCCGAAGAT GATCTGCTGA CGATCCTGGC CAGCTTGAAC ACCCTTTACG AGGCCGCTCG GGTATTTCCG GACAGCGACG AAGTCGCTCT GTACGAACGT AGCGGGCTTT ATCAGGGACA GCCTGCCAAC GAGGTACTTA TGCGCGCCTA TCACGCTGGT TTGCAGACGC AACTGCTGCC ACGAATGGTC AGCATGTTCG AAGCCCGGAT ACTGGACAGC CTGCGGGACC GCGAGCAATT GCTGAGCAGC CTTCGCGCCT ATCTGATGCT GATTCAGCGA GAGCACCGGT TACCTTCTGC ACTGGAGACA TGGGCCACCG CCGACTGGTC AATTCGCTAT GCCGGGCACG CACAGGCTCA GCGCGAGCTG AACCAGCATT TCAAGCGCTT GCTTGCGCTG CCTTTTGTCT ATCCGGCCAA CGATGCTCTG GTGGCGCAGG CGCGTCAGGT GTTGCGTAAT GAATCACTCG CCACTGTGGT TTATCGGGTA CTGCGTGAAA AAGCCCGGGT ATTGCCGGAT TACAGCCTGG CTCATCACAC CGGGCCACAA GAAGCAGTGT TGGCAGGTGC CGACTATCGA ATTCCAGGGC TTTATACGCG TCAGGGTTAC GAGCGGTACT TCGTCACACA CGGCACCGGA CTGGTGACTG AAATCATGCG TGACAATTGG GTACTGGGGG AGGGGGCACC GTTCAGCGTC ACTCAATTGC GCGCGCTGAT GGTCGAGCTG GAAAAGCTGT ACTTCCGGGA TTACGCCGAC CATTGGGCAG AGGCCATTGG CCGGGTTTCA TTGCATCCTT TTGAGGGGCC AGCTCAGGGC GCAGTGCAAA TGGCAGGCCT GGCGGCGGCC CATTCGCCTT TGCTGAGGTT GCTGACCGAG GTGCGCGACA ACACGCGGTT TCCGATGCTT GCGGACAGCC TTGACGCTGC GAAAACACAA GTCGGTAAAA CAGTTTCAAC CCCTGCAGTG CTTGACCAGG CGGTTGCTCT TGGCGAGCAA TTGCAACAGT CGGCTGCCAG TAGTTTGCCC GAGACAGCCA AGAAATCATT GCAGCGACGT TTTGATGCGC TGCATCGATT GCTGGATGAG GAAAGCGGTC CCTCAGCCGA CCTGATGGCT GCGCTGAACG CCGTCAATGA GTTGCAGATG CAGATGGCCG CGCTGGCACG CTCCGGTCAA CCTGATCTGG CTGCCTACGA GATGGCCAAA GGGCGGATGT CCGGGCAGCG AGATGCACTG AACAACCTGC GCAGCGCGGC GACAGTGTTG CCTCAACCCG TCGGCGGCTG GTTTGACAAG CTGGCTGAAG ACACCTGGAG TTTCGTGCTG TATCAGTCTC ACCACTATCT GAACCAACGC TACAAGGCCG AGCTTTACAG TTTCTATGAG CAGTCTCTCG ACAAACGCTA TCCGTTTCAT GCCCACAGCA GCAGCGACGT GGCGCTTGAG GACTTTCGTG AATTCTTCGG GCCACAAGGC ATTGCCGAGC GGTTTTTCGA TAACTACCTG AGGCCTTTTG TCAGCGGCAG CCCGGGAAAC CTCCGCTTGC GCACCCTCGA CGGTTACAGC CTGCCGATGA GTCGTGCCTA CCTGCACCAG ATGGCCGGCG TGCATGACAT CCGCAAAAGC TTCTTCAGCA CTCACACACC GGAGCCGCAG GTGCAATTCA CCCTTGAGCC CTACACACTT GACCCTGGCG TGCGCCGCGC GGAATTTCGT CTGGGCGATC AGTCGCTGGA GTATCGCCAC GGTCCAATCG TGCCGATGGG GTTCAAATGG CCGGCAGGCA TCGACAATGG GCGCGCGAGT CTGGTCATGG ACGGTAGGCT CGGACGGCCG CTGGGCATAG AAAAGAACAA CGGCCCATGG TCGCTGTTTC GCCTCTTCGA CCTGATGCAG ACCGAGCCTT TGCAAGGACG TGATGTGCTA CTGCTCAAAG CCGATGTCGG CGGCATGCGC GCGCATTATC TTTTGTCGAG CCTGCGCGCG CCCAATCCTT TCGATATGAC TGCATTGCGC GGTTTTCGCA TGCCTGCGCA GCTTTGA
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Protein sequence | MKSLFKKLIE VLCKTWVWSL LLVFLLAASI WSFGPLLAVS DNRFWEGTSA RLITISVLFL VWGLGMVFTN WRGSLIKRQA EESETGKECL RKSVVMEKER LELASRFTDA QRVLKDSALF GELGARGRKE LPWYVLIGPQ GSGKTSLLDF SGLDFPLDRP ARKLTRDTSS TGSCDWYFTH QAILLDTSGR YFDQPDPQVD GGAWMTLLGL LQGRLRTQPL SGVLVTLPVD ILLDGLDKRL EKVAGDVRVR LDEIFRRLHV DVPVYLVLTK ADSIAGFDDF FDQLSREESE QVLGTTFKKG QRGTDVDVIS QAFETLLQRL GSQVITRIHQ ERDSQRRGRM LEFPNQLGGI GRRLNIFAEL AFSGNRYQRA SQLRGFYLTR APHVMQQGGQ QPEPETGAGL PVQHGGRARF IHDLLRHVIF PESDLAMLGK EARKKIQWRQ KGMYCAALLF LAVSGALWAT GFNANHDRLE KLRTLGEQWT RQTSSLTAED DLLTILASLN TLYEAARVFP DSDEVALYER SGLYQGQPAN EVLMRAYHAG LQTQLLPRMV SMFEARILDS LRDREQLLSS LRAYLMLIQR EHRLPSALET WATADWSIRY AGHAQAQREL NQHFKRLLAL PFVYPANDAL VAQARQVLRN ESLATVVYRV LREKARVLPD YSLAHHTGPQ EAVLAGADYR IPGLYTRQGY ERYFVTHGTG LVTEIMRDNW VLGEGAPFSV TQLRALMVEL EKLYFRDYAD HWAEAIGRVS LHPFEGPAQG AVQMAGLAAA HSPLLRLLTE VRDNTRFPML ADSLDAAKTQ VGKTVSTPAV LDQAVALGEQ LQQSAASSLP ETAKKSLQRR FDALHRLLDE ESGPSADLMA ALNAVNELQM QMAALARSGQ PDLAAYEMAK GRMSGQRDAL NNLRSAATVL PQPVGGWFDK LAEDTWSFVL YQSHHYLNQR YKAELYSFYE QSLDKRYPFH AHSSSDVALE DFREFFGPQG IAERFFDNYL RPFVSGSPGN LRLRTLDGYS LPMSRAYLHQ MAGVHDIRKS FFSTHTPEPQ VQFTLEPYTL DPGVRRAEFR LGDQSLEYRH GPIVPMGFKW PAGIDNGRAS LVMDGRLGRP LGIEKNNGPW SLFRLFDLMQ TEPLQGRDVL LLKADVGGMR AHYLLSSLRA PNPFDMTALR GFRMPAQL
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