Gene PSPTO_2554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2554 
Symbol 
ID1184206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2820042 
End bp2823548 
Gene Length3507 bp 
Protein Length1168 aa 
Translation table11 
GC content58% 
IMG OID637393925 
Producthypothetical protein 
Protein accessionNP_792364 
Protein GI28869745 
COG category[S] Function unknown 
COG ID[COG3523] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03348] type VI secretion protein IcmF 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.024238 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATCCC TCTTTAAAAA GCTCATTGAA GTGTTGTGTA AAACCTGGGT CTGGTCACTG 
TTGCTGGTGT TTTTGTTGGC GGCATCGATA TGGAGTTTTG GTCCGCTGCT GGCGGTGTCG
GATAACAGGT TCTGGGAAGG CACCAGCGCA CGGTTGATAA CAATCAGTGT GTTGTTTCTG
GTGTGGGGGC TGGGGATGGT CTTTACCAAC TGGCGCGGTA GCCTGATCAA AAGGCAGGCC
GAGGAAAGTG AGACGGGCAA AGAGTGCCTG CGCAAGTCGG TTGTGATGGA AAAGGAGCGC
CTGGAACTTG CCAGTCGCTT CACGGATGCC CAGCGCGTCC TCAAGGATTC CGCTCTGTTT
GGAGAACTGG GCGCTCGCGG CCGCAAGGAG CTGCCCTGGT ATGTATTGAT CGGCCCTCAG
GGCAGTGGCA AGACCAGTCT GCTGGATTTT TCCGGGCTCG ATTTCCCCCT CGACAGACCG
GCTCGCAAAC TGACTCGCGA TACGAGCAGT ACCGGCAGTT GCGACTGGTA CTTCACACAC
CAGGCGATCC TTCTGGACAC ATCGGGCCGC TATTTCGATC AGCCTGATCC CCAAGTGGAC
GGCGGCGCAT GGATGACGCT GTTGGGGCTG TTACAGGGAC GTCTGCGAAC GCAGCCGCTC
AGCGGTGTGC TGGTGACATT GCCGGTGGAT ATTCTTCTTG ATGGCCTGGA CAAGCGTCTG
GAGAAAGTCG CTGGAGATGT ACGTGTTCGT CTGGACGAGA TCTTTCGCCG GTTGCACGTT
GATGTTCCGG TTTACCTGGT GCTGACCAAA GCAGACTCGA TAGCGGGTTT CGATGATTTC
TTTGATCAAT TGTCTCGCGA GGAAAGTGAG CAGGTCCTTG GGACAACGTT CAAAAAAGGG
CAGCGAGGCA CCGATGTCGA CGTCATCAGT CAGGCGTTCG AGACCTTGCT ACAGCGCCTG
GGCAGTCAGG TCATAACTCG TATTCATCAG GAGCGCGACA GCCAGCGTCG GGGGAGAATG
CTCGAGTTTC CCAATCAGCT TGGGGGCATC GGACGCCGGC TGAATATTTT TGCCGAGTTG
GCGTTTTCCG GGAACCGCTA TCAGCGAGCC AGTCAATTGC GTGGCTTTTA CCTGACCCGT
GCACCCCACG TCATGCAGCA GGGCGGTCAA CAACCTGAGC CTGAAACCGG TGCGGGTCTT
CCTGTGCAAC ACGGTGGCCG CGCACGGTTT ATTCATGATC TGTTACGTCA TGTCATTTTT
CCTGAGTCCG ATCTGGCCAT GCTCGGCAAA GAAGCCCGGA AGAAAATCCA GTGGCGGCAA
AAGGGCATGT ATTGTGCAGC GCTGCTATTT CTGGCGGTGT CTGGTGCGCT CTGGGCGACC
GGCTTCAATG CTAACCACGA CAGGCTGGAA AAGCTTCGCA CACTGGGTGA GCAGTGGACG
CGGCAGACGT CATCGCTCAC CGCCGAAGAT GATCTGCTGA CGATCCTGGC CAGCTTGAAC
ACCCTTTACG AGGCCGCTCG GGTATTTCCG GACAGCGACG AAGTCGCTCT GTACGAACGT
AGCGGGCTTT ATCAGGGACA GCCTGCCAAC GAGGTACTTA TGCGCGCCTA TCACGCTGGT
TTGCAGACGC AACTGCTGCC ACGAATGGTC AGCATGTTCG AAGCCCGGAT ACTGGACAGC
CTGCGGGACC GCGAGCAATT GCTGAGCAGC CTTCGCGCCT ATCTGATGCT GATTCAGCGA
GAGCACCGGT TACCTTCTGC ACTGGAGACA TGGGCCACCG CCGACTGGTC AATTCGCTAT
GCCGGGCACG CACAGGCTCA GCGCGAGCTG AACCAGCATT TCAAGCGCTT GCTTGCGCTG
CCTTTTGTCT ATCCGGCCAA CGATGCTCTG GTGGCGCAGG CGCGTCAGGT GTTGCGTAAT
GAATCACTCG CCACTGTGGT TTATCGGGTA CTGCGTGAAA AAGCCCGGGT ATTGCCGGAT
TACAGCCTGG CTCATCACAC CGGGCCACAA GAAGCAGTGT TGGCAGGTGC CGACTATCGA
ATTCCAGGGC TTTATACGCG TCAGGGTTAC GAGCGGTACT TCGTCACACA CGGCACCGGA
CTGGTGACTG AAATCATGCG TGACAATTGG GTACTGGGGG AGGGGGCACC GTTCAGCGTC
ACTCAATTGC GCGCGCTGAT GGTCGAGCTG GAAAAGCTGT ACTTCCGGGA TTACGCCGAC
CATTGGGCAG AGGCCATTGG CCGGGTTTCA TTGCATCCTT TTGAGGGGCC AGCTCAGGGC
GCAGTGCAAA TGGCAGGCCT GGCGGCGGCC CATTCGCCTT TGCTGAGGTT GCTGACCGAG
GTGCGCGACA ACACGCGGTT TCCGATGCTT GCGGACAGCC TTGACGCTGC GAAAACACAA
GTCGGTAAAA CAGTTTCAAC CCCTGCAGTG CTTGACCAGG CGGTTGCTCT TGGCGAGCAA
TTGCAACAGT CGGCTGCCAG TAGTTTGCCC GAGACAGCCA AGAAATCATT GCAGCGACGT
TTTGATGCGC TGCATCGATT GCTGGATGAG GAAAGCGGTC CCTCAGCCGA CCTGATGGCT
GCGCTGAACG CCGTCAATGA GTTGCAGATG CAGATGGCCG CGCTGGCACG CTCCGGTCAA
CCTGATCTGG CTGCCTACGA GATGGCCAAA GGGCGGATGT CCGGGCAGCG AGATGCACTG
AACAACCTGC GCAGCGCGGC GACAGTGTTG CCTCAACCCG TCGGCGGCTG GTTTGACAAG
CTGGCTGAAG ACACCTGGAG TTTCGTGCTG TATCAGTCTC ACCACTATCT GAACCAACGC
TACAAGGCCG AGCTTTACAG TTTCTATGAG CAGTCTCTCG ACAAACGCTA TCCGTTTCAT
GCCCACAGCA GCAGCGACGT GGCGCTTGAG GACTTTCGTG AATTCTTCGG GCCACAAGGC
ATTGCCGAGC GGTTTTTCGA TAACTACCTG AGGCCTTTTG TCAGCGGCAG CCCGGGAAAC
CTCCGCTTGC GCACCCTCGA CGGTTACAGC CTGCCGATGA GTCGTGCCTA CCTGCACCAG
ATGGCCGGCG TGCATGACAT CCGCAAAAGC TTCTTCAGCA CTCACACACC GGAGCCGCAG
GTGCAATTCA CCCTTGAGCC CTACACACTT GACCCTGGCG TGCGCCGCGC GGAATTTCGT
CTGGGCGATC AGTCGCTGGA GTATCGCCAC GGTCCAATCG TGCCGATGGG GTTCAAATGG
CCGGCAGGCA TCGACAATGG GCGCGCGAGT CTGGTCATGG ACGGTAGGCT CGGACGGCCG
CTGGGCATAG AAAAGAACAA CGGCCCATGG TCGCTGTTTC GCCTCTTCGA CCTGATGCAG
ACCGAGCCTT TGCAAGGACG TGATGTGCTA CTGCTCAAAG CCGATGTCGG CGGCATGCGC
GCGCATTATC TTTTGTCGAG CCTGCGCGCG CCCAATCCTT TCGATATGAC TGCATTGCGC
GGTTTTCGCA TGCCTGCGCA GCTTTGA
 
Protein sequence
MKSLFKKLIE VLCKTWVWSL LLVFLLAASI WSFGPLLAVS DNRFWEGTSA RLITISVLFL 
VWGLGMVFTN WRGSLIKRQA EESETGKECL RKSVVMEKER LELASRFTDA QRVLKDSALF
GELGARGRKE LPWYVLIGPQ GSGKTSLLDF SGLDFPLDRP ARKLTRDTSS TGSCDWYFTH
QAILLDTSGR YFDQPDPQVD GGAWMTLLGL LQGRLRTQPL SGVLVTLPVD ILLDGLDKRL
EKVAGDVRVR LDEIFRRLHV DVPVYLVLTK ADSIAGFDDF FDQLSREESE QVLGTTFKKG
QRGTDVDVIS QAFETLLQRL GSQVITRIHQ ERDSQRRGRM LEFPNQLGGI GRRLNIFAEL
AFSGNRYQRA SQLRGFYLTR APHVMQQGGQ QPEPETGAGL PVQHGGRARF IHDLLRHVIF
PESDLAMLGK EARKKIQWRQ KGMYCAALLF LAVSGALWAT GFNANHDRLE KLRTLGEQWT
RQTSSLTAED DLLTILASLN TLYEAARVFP DSDEVALYER SGLYQGQPAN EVLMRAYHAG
LQTQLLPRMV SMFEARILDS LRDREQLLSS LRAYLMLIQR EHRLPSALET WATADWSIRY
AGHAQAQREL NQHFKRLLAL PFVYPANDAL VAQARQVLRN ESLATVVYRV LREKARVLPD
YSLAHHTGPQ EAVLAGADYR IPGLYTRQGY ERYFVTHGTG LVTEIMRDNW VLGEGAPFSV
TQLRALMVEL EKLYFRDYAD HWAEAIGRVS LHPFEGPAQG AVQMAGLAAA HSPLLRLLTE
VRDNTRFPML ADSLDAAKTQ VGKTVSTPAV LDQAVALGEQ LQQSAASSLP ETAKKSLQRR
FDALHRLLDE ESGPSADLMA ALNAVNELQM QMAALARSGQ PDLAAYEMAK GRMSGQRDAL
NNLRSAATVL PQPVGGWFDK LAEDTWSFVL YQSHHYLNQR YKAELYSFYE QSLDKRYPFH
AHSSSDVALE DFREFFGPQG IAERFFDNYL RPFVSGSPGN LRLRTLDGYS LPMSRAYLHQ
MAGVHDIRKS FFSTHTPEPQ VQFTLEPYTL DPGVRRAEFR LGDQSLEYRH GPIVPMGFKW
PAGIDNGRAS LVMDGRLGRP LGIEKNNGPW SLFRLFDLMQ TEPLQGRDVL LLKADVGGMR
AHYLLSSLRA PNPFDMTALR GFRMPAQL