| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2553 |
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| Symbol | |
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| ID | 1184205 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2819156 |
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| End bp | 2820028 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637393924 |
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| Product | hypothetical protein |
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| Protein accession | NP_792363 |
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| Protein GI | 28869744 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00740521 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGAAT TGAACGATGA GCAAGGCCGT CGCGAAGACA GCACTATTGA CTATGGCTGG
GTTGATGCCG CCCGGGGCGA TGACCTGTTT ACCGACGTCA ACGACACGAA TATCCCTGAG
GGCCCAACGG CGCGACGGGT CCAGAACTCC GGGAGAACAG ACGAGCGCTT CAATATTCAT
GTCAATCCGC TGGTTGCAGC GGCAAGCGGG CTGCTTGCTC AGGTAGCGAG GCTGCCTGTT
GCAGACGAAG TTGGCGATAT TCATTTTCTC AACGTACAGC TGTCGGACCA GGTAAAGCTG
TTCGAGGCCG AGGCCCGCAA GCGCGCAATC GATAACGATC AGCTACTCGC CGCACGCTAT
GTGTTGTGCA CGGTGGTGGA CGAAGCTGTT TTGAATACGC GCTGGGGCAG CGCAAGTGAC
TGGTCGAAGA TCAGCCTGCT GAGCCGCTTT CACAAGGAAA CATTCGGCGG GGAAAAGTTC
TTTCAATTGC TCGAAAGACT TTCCACCAAC CCGTTCAAAC ACTTGCCGAT GCTTGAGTTG
ATGTACCTGT GTCTGGCACT CGGGTTTGAA GGGAAATACC GCTCGACCCG CCGTAATAGC
AGTGAACTGG AAGATATCCG GGACAGCCTT TACCGGCAGA TAAGGCACCT CAGAGGCGAC
GTCTCTCGAA CCCTTTCACC TCACTGGCAG GGCGCGGAGT CATCACGTAA CGGTCCGCTG
CGTATTGTGC CGATATGGCT GATTGTGCTG TTCACCTTTA CCAGTCTGAC AGTGCTGTAT
TCGGGGTTCG CCTGGGTGCT GAGCGAGCAG CGTGAGGCTG TACTCACACC TTATCGGTCA
GCACTTTCGA CAGTGCTCGA GCCTCGATCC TGA
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| Protein sequence | MNELNDEQGR REDSTIDYGW VDAARGDDLF TDVNDTNIPE GPTARRVQNS GRTDERFNIH
VNPLVAAASG LLAQVARLPV ADEVGDIHFL NVQLSDQVKL FEAEARKRAI DNDQLLAARY
VLCTVVDEAV LNTRWGSASD WSKISLLSRF HKETFGGEKF FQLLERLSTN PFKHLPMLEL
MYLCLALGFE GKYRSTRRNS SELEDIRDSL YRQIRHLRGD VSRTLSPHWQ GAESSRNGPL
RIVPIWLIVL FTFTSLTVLY SGFAWVLSEQ REAVLTPYRS ALSTVLEPRS
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