| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2549 |
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| Symbol | |
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| ID | 1184201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2815564 |
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| End bp | 2817093 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637393920 |
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| Product | sigma-54 dependent transcriptional regulator |
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| Protein accession | NP_792359 |
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| Protein GI | 28869740 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0908365 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTCAC CGTTCAACGC ACTGCCCGAC CCGCTGAGTT ATGCGCAAAC GCTGGTTTCA
CACTACTCGA TCCTCTCACA GGCTGATGAA AGGCGATCCC TGCTGGAGGG TTTCGTCAGA
GCGGCTGCCG AACTCAGCGG CTGTGAATCA AGCCAGTTGT TTCTGCTCGA TAGCAAACAC
AAATGTCTCG GCCTCGCTGC GCAAATCGTA GAAGGCGTCA TTCGGTCCTG CAGCAGGAAG
GCATCACCGG AAGACTTCTG TGACTTGCCT CTGCTGCGTT TCAGTCTGCT TCAAAACCGG
GTCGTCAGTA TTCCGGAAAT CAGCAGCAGC CCCTACGCAA CAGACTGTTT GCCCGTGCAG
GAACATGCAT GGCAGTCACT GCTGTGCATT CCGCTGCCAA GCCGCGACAA CATACCCGTC
GGGCTGCTGG TCTGTGCGAG CAGGCAATGC CGACCGCTGG ACGGCTATGC AGGCTCACTG
GGTGCATTGG GCTCGTTCGT GATTTCTCAG TTGGGTCTGC TCGCGTTACC GGACAAGCCT
GGCAGCGCCG CGTCTCACCC GCGAAGGCCC GCCGCAAAGC CCGCGCAATT CGGGCTTACC
GGAAACAGCG CAGCCCTGGG CCGCACAACC CATCTTCTCA GCAAAGTGCT GGACAGCACC
TGCACCATTT TGCTTACCGG TGAAACCGGG ACAGGCAAGG AAGTGGTATC TCGTGCCCTT
CACGAGTACG GGCCTCGGCG CCTGAACGCC TTCGTCGTAC AGAATTGTGC TGCATTCCCG
GAAGCTCTGC TGGAAAGCGA GCTGTTTGGC TATCGCAAGG GCGCTTTCAC CGGTGCTGAT
CGGGATCGAC GTGGCCTGTT CGATACGGCT CATGGCGGTA CGCTTCTGCT TGATGAAATC
GGTGATATGC CGATGCTGTT GCAGGCAAAG CTGCTACGCG TATTGCAGGA GGGAGAGATT
CGTCCGCTGG GCTCCAATGA AGTGCGCAAG GTTGATGTAC GAATTATTGC GGCCACCCAT
AGGGATCTTC CTAAGCTGAT TGCCGAGGGG CGCTTTCGTG AAGACCTTTA CTACAGGCTG
GCCCAGTTTC CCATTGAACT TCCTCCACTG CGTAAACGTG TAGAGGACAT AGAAATACTG
GCCAGGCACT TCTCCGATAT GGCCTGCCGC CAATCACAGA AAGAGCCTGT GCAGTGGTCG
GAAGCTGCGT TGAGCGTTTT ATCCGGGTAC GCCTTTCCAG GCAACATTCG GGAGTTGAAG
GGGTTCGTCG AGCGCGCAGT GCTGTTATGC GAAGACAATA AGTTGCGGCC CGAGCACTTT
CCGATTGCCT CCGATTCAGT GAGCCATCCG GCCTGTTTAA CACTGCGCGA ACACATCGAG
CAGTTCGAGC GTGGCGTTCT CATGGAGTGT TTGCGCGACA GCAACGGTAA TCGCAGTCGT
GCAGCCCGCA CATTGGGTGT ATCGCGCCGT ACTCTGCTTT ACCGTCTGGC TCATTTGAAA
ATGGGCGCCA CTCATGAAAA GCGTGATTAA
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| Protein sequence | MTSPFNALPD PLSYAQTLVS HYSILSQADE RRSLLEGFVR AAAELSGCES SQLFLLDSKH
KCLGLAAQIV EGVIRSCSRK ASPEDFCDLP LLRFSLLQNR VVSIPEISSS PYATDCLPVQ
EHAWQSLLCI PLPSRDNIPV GLLVCASRQC RPLDGYAGSL GALGSFVISQ LGLLALPDKP
GSAASHPRRP AAKPAQFGLT GNSAALGRTT HLLSKVLDST CTILLTGETG TGKEVVSRAL
HEYGPRRLNA FVVQNCAAFP EALLESELFG YRKGAFTGAD RDRRGLFDTA HGGTLLLDEI
GDMPMLLQAK LLRVLQEGEI RPLGSNEVRK VDVRIIAATH RDLPKLIAEG RFREDLYYRL
AQFPIELPPL RKRVEDIEIL ARHFSDMACR QSQKEPVQWS EAALSVLSGY AFPGNIRELK
GFVERAVLLC EDNKLRPEHF PIASDSVSHP ACLTLREHIE QFERGVLMEC LRDSNGNRSR
AARTLGVSRR TLLYRLAHLK MGATHEKRD
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